PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PGSC0003DMP400016096 | ||||||||
Common Name | LOC102591860 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 380aa MW: 42166.4 Da PI: 4.7363 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.9 | 5.8e-19 | 112 | 161 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+G+r+++ +g+W+AeIrdp++ r++lg+f taeeAa+a++ ++k++g PGSC0003DMP400016096 112 QYRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFNTAEEAARAYDIEARKIRG 161 69*******.**********954...4************************998 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 3.2E-32 | 112 | 171 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.75E-22 | 112 | 171 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 2.2E-37 | 112 | 175 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 5.04E-33 | 112 | 170 | No hit | No description |
PROSITE profile | PS51032 | 24.171 | 112 | 169 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.4E-11 | 113 | 159 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.1E-11 | 113 | 124 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.1E-11 | 135 | 151 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0070483 | Biological Process | detection of hypoxia | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005886 | Cellular Component | plasma membrane | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 380 aa Download sequence Send to blast |
MCGGSIISDY IDPNRTSRRL TAELLWGRFD LSKKQKNPNN YHSKHLRSEV VDDFEADFQD 60 FKELSDDEDV EVDVKPFAFS ASKQSTGSKS SKTVDSDKDA ADKSSKRKRK NQYRGIRQRP 120 WGKWAAEIRD PRKGVRVWLG TFNTAEEAAR AYDIEARKIR GKKAKVNFPD EAPAPASRHT 180 VKVNPQKVLP EESLDSLQSD SAIMNSDHYD SFGFFEEKPM TKQYGYENGS SASADTGFGS 240 FVPSVGGDIY FNSDVGSNSF ECSDFGWGEP CSRTPEISSV LSAAVDSNEA QFVEDANPQK 300 KLKSCTNNPV ADDGNTVNML SEELPAFAPQ MNFFHLQYME GNWDASVGNF LNTSATQNGE 360 NAMDLWSFDD VPSLMGGIF* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 8e-21 | 112 | 169 | 2 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
5wx9_A | 1e-20 | 111 | 171 | 13 | 74 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00204 | DAP | Transfer from AT1G53910 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | PGSC0003DMP400016096 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT013179 | 0.0 | BT013179.1 Lycopersicon esculentum clone 134255R, mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006342909.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor RAP2-12-like isoform X2 | ||||
TrEMBL | M1AIN6 | 0.0 | M1AIN6_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400023609 | 0.0 | (Solanum tuberosum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G53910.3 | 8e-62 | related to AP2 12 |
Link Out ? help Back to Top | |
---|---|
Phytozome | PGSC0003DMP400016096 |
Entrez Gene | 102591860 |
Publications ? help Back to Top | |||
---|---|---|---|
|