PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400016096
Common NameLOC102591860
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ERF
Protein Properties Length: 380aa    MW: 42166.4 Da    PI: 4.7363
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400016096genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.95.8e-19112161255
                   AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                           +y+G+r+++ +g+W+AeIrdp++     r++lg+f taeeAa+a++  ++k++g
  PGSC0003DMP400016096 112 QYRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFNTAEEAARAYDIEARKIRG 161
                           69*******.**********954...4************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.103.2E-32112171IPR001471AP2/ERF domain
SuperFamilySSF541712.75E-22112171IPR016177DNA-binding domain
SMARTSM003802.2E-37112175IPR001471AP2/ERF domain
CDDcd000185.04E-33112170No hitNo description
PROSITE profilePS5103224.171112169IPR001471AP2/ERF domain
PfamPF008472.4E-11113159IPR001471AP2/ERF domain
PRINTSPR003671.1E-11113124IPR001471AP2/ERF domain
PRINTSPR003671.1E-11135151IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0070483Biological Processdetection of hypoxia
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
MCGGSIISDY IDPNRTSRRL TAELLWGRFD LSKKQKNPNN YHSKHLRSEV VDDFEADFQD  60
FKELSDDEDV EVDVKPFAFS ASKQSTGSKS SKTVDSDKDA ADKSSKRKRK NQYRGIRQRP  120
WGKWAAEIRD PRKGVRVWLG TFNTAEEAAR AYDIEARKIR GKKAKVNFPD EAPAPASRHT  180
VKVNPQKVLP EESLDSLQSD SAIMNSDHYD SFGFFEEKPM TKQYGYENGS SASADTGFGS  240
FVPSVGGDIY FNSDVGSNSF ECSDFGWGEP CSRTPEISSV LSAAVDSNEA QFVEDANPQK  300
KLKSCTNNPV ADDGNTVNML SEELPAFAPQ MNFFHLQYME GNWDASVGNF LNTSATQNGE  360
NAMDLWSFDD VPSLMGGIF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A8e-21112169260ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
5wx9_A1e-201111711374Ethylene-responsive transcription factor ERF096
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00204DAPTransfer from AT1G53910Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400016096
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0131790.0BT013179.1 Lycopersicon esculentum clone 134255R, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006342909.10.0PREDICTED: ethylene-responsive transcription factor RAP2-12-like isoform X2
TrEMBLM1AIN60.0M1AIN6_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000236090.0(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53910.38e-62related to AP2 12
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]