PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400016093
Common NameLOC102591860
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ERF
Protein Properties Length: 391aa    MW: 43343.7 Da    PI: 4.9405
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400016093genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.96.1e-19112161255
                   AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                           +y+G+r+++ +g+W+AeIrdp++     r++lg+f taeeAa+a++  ++k++g
  PGSC0003DMP400016093 112 QYRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFNTAEEAARAYDIEARKIRG 161
                           69*******.**********954...4************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003802.2E-37112175IPR001471AP2/ERF domain
CDDcd000189.53E-33112170No hitNo description
PROSITE profilePS5103224.171112169IPR001471AP2/ERF domain
SuperFamilySSF541712.88E-22112171IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.3E-32112171IPR001471AP2/ERF domain
PRINTSPR003671.2E-11113124IPR001471AP2/ERF domain
PfamPF008472.5E-11113159IPR001471AP2/ERF domain
PRINTSPR003671.2E-11135151IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0070483Biological Processdetection of hypoxia
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 391 aa     Download sequence    Send to blast
MCGGSIISDY IDPNRTSRRL TAELLWGRFD LSKKQKNPNN YHSKHLRSEV VDDFEADFQD  60
FKELSDDEDV EVDVKPFAFS ASKQSTGSKS SKTVDSDKDA ADKSSKRKRK NQYRGIRQRP  120
WGKWAAEIRD PRKGVRVWLG TFNTAEEAAR AYDIEARKIR GKKAKVNFPD EAPAPASRHT  180
VKVNPQKVLP EESLDSLQSD SAIMNSDHYD SFGFFEEKPM TKQYGYENGS SASADTGFGS  240
FVPSVGGDIY FNSDVGSNSF ECSDFGWGEP CSRTPEISSV LSAAVDSNEA QFVEDANPQK  300
KLKSCTNNPV ADDGNTVNML SEELPAFAPQ MNFFHLQYME GNWDASVGNF LNTSATQNGE  360
NAMDLWSFDD VPSLMGGVSG GGRRMIHRET *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-201111711374Ethylene-responsive transcription factor ERF096
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00204DAPTransfer from AT1G53910Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400016093
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0131790.0BT013179.1 Lycopersicon esculentum clone 134255R, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006342907.10.0PREDICTED: ethylene-responsive transcription factor RAP2-12-like isoform X1
RefseqXP_006342908.10.0PREDICTED: ethylene-responsive transcription factor RAP2-12-like isoform X1
TrEMBLM1AIN50.0M1AIN5_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000236090.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14462466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53910.34e-61related to AP2 12
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]