PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400015892
Common NameLOC102605418
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB
Protein Properties Length: 364aa    MW: 40888 Da    PI: 4.7803
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400015892genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.12.7e-151461148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                          rgrWT+eEd++l +++   G g+W++ ++  g+ R++k+c++rw +yl
  PGSC0003DMP400015892 14 RGRWTAEEDQILTNYILSNGEGSWRSLPKNAGLLRCGKSCRLRWINYL 61
                          8*******************************99************97 PP
2Myb_DNA-binding48.81.6e-1567112148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                           rg+ T +E+++++++++ lG++ W++Ia ++  gRt++++k++w+++l
  PGSC0003DMP400015892  67 RGNITSQEEDIIIKLHATLGNR-WSLIAGHLS-GRTDNEIKNYWNSHL 112
                           7999******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.2E-20564IPR009057Homeodomain-like
PROSITE profilePS5129415.051961IPR017930Myb domain
SuperFamilySSF466898.41E-2711108IPR009057Homeodomain-like
SMARTSM007171.3E-101363IPR001005SANT/Myb domain
PfamPF002494.0E-131461IPR001005SANT/Myb domain
CDDcd001671.95E-71661No hitNo description
PROSITE profilePS5129423.75362116IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.4E-2465116IPR009057Homeodomain-like
SMARTSM007171.5E-1466114IPR001005SANT/Myb domain
PfamPF002492.4E-1367112IPR001005SANT/Myb domain
CDDcd001674.48E-971112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009813Biological Processflavonoid biosynthetic process
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MGRTPCCEKV GIKRGRWTAE EDQILTNYIL SNGEGSWRSL PKNAGLLRCG KSCRLRWINY  60
LRSDLKRGNI TSQEEDIIIK LHATLGNRWS LIAGHLSGRT DNEIKNYWNS HLSRKVDSLR  120
IPSDEKLPKA VVDLAKKGTL RPIKHCRKSS INRSKNKKSN LLEAKENSTC GPLSGIVPMP  180
STPNMEKEAL CSANMPACDS AMELMQEDVA KVEVPNSWAG SIEAKGSLSS DSGMEWPRLE  240
EIMPDVVIDD DDMNPNFILN CLEEEVMSNN NAGNNYSCID EGNKNISSDD KKSKLLMDWQ  300
DGDELVWPTP PWELETDIIP SWPQWDDTDT DLLQNCTNNN YEEATTMEIN NQNHSAIVSW  360
IFS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-22141187110B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00627PBMTransfer from PK06182.1Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400015892
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFN5551270.0FN555127.1 Solanum chmielewskii mRNA for Myb 12 transcription factor (myb12 gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006349204.10.0PREDICTED: transcription factor MYB12
TrEMBLM1AI580.0M1AI58_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000233220.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47460.12e-72myb domain protein 12
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]