PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400015687 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | Dof | ||||||||
Protein Properties | Length: 293aa MW: 30739.2 Da PI: 10.2188 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 120.5 | 6e-38 | 80 | 139 | 3 | 62 |
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 e+alkcprCds+ntkfCy+nnyslsqPr+fCkaC+ryWt+GGalr vPvGgg+r+nk+s+ PGSC0003DMP400015687 80 ETALKCPRCDSANTKFCYFNNYSLSQPRHFCKACKRYWTRGGALRSVPVGGGCRRNKRSN 139 7789*****************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 2.0E-34 | 63 | 132 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 1.4E-32 | 82 | 137 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.134 | 83 | 137 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 85 | 121 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 293 aa Download sequence Send to blast |
MNFSSIPAYL DPANWQQQSG STIQNHHHQQ QQLTSAPPPP VLPPSPVVVP LQPHGGGGAG 60 SIRPGSMADR ARMANIPMPE TALKCPRCDS ANTKFCYFNN YSLSQPRHFC KACKRYWTRG 120 GALRSVPVGG GCRRNKRSNN NNKNSNNNNN NNSSKSPASS TSTDGRQGTN NSGSSTTISS 180 HSNSFSGPAS ATSLLGLMSP QIPPLRFMSP LGGTTEGMMV NNNNMLGAGA GAGVGVGGHV 240 ASLLSSGNLE HWKMQQQFPN FLGGFDPSNS PSSYPFQGGV HEAVQYLGGV GL* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00483 | DAP | Transfer from AT5G02460 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400015687 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975521 | 1e-140 | HG975521.1 Solanum lycopersicum chromosome ch09, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006341037.1 | 1e-142 | PREDICTED: dof zinc finger protein DOF2.4-like | ||||
TrEMBL | M1AHM8 | 0.0 | M1AHM8_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400023033 | 1e-141 | (Solanum tuberosum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G02460.1 | 2e-44 | Dof family protein |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400015687 |
Publications ? help Back to Top | |||
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