PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400015687
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family Dof
Protein Properties Length: 293aa    MW: 30739.2 Da    PI: 10.2188
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400015687genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof120.56e-3880139362
                zf-Dof   3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                           e+alkcprCds+ntkfCy+nnyslsqPr+fCkaC+ryWt+GGalr vPvGgg+r+nk+s+
  PGSC0003DMP400015687  80 ETALKCPRCDSANTKFCYFNNYSLSQPRHFCKACKRYWTRGGALRSVPVGGGCRRNKRSN 139
                           7789*****************************************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074782.0E-3463132IPR003851Zinc finger, Dof-type
PfamPF027011.4E-3282137IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.13483137IPR003851Zinc finger, Dof-type
PROSITE patternPS01361085121IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MNFSSIPAYL DPANWQQQSG STIQNHHHQQ QQLTSAPPPP VLPPSPVVVP LQPHGGGGAG  60
SIRPGSMADR ARMANIPMPE TALKCPRCDS ANTKFCYFNN YSLSQPRHFC KACKRYWTRG  120
GALRSVPVGG GCRRNKRSNN NNKNSNNNNN NNSSKSPASS TSTDGRQGTN NSGSSTTISS  180
HSNSFSGPAS ATSLLGLMSP QIPPLRFMSP LGGTTEGMMV NNNNMLGAGA GAGVGVGGHV  240
ASLLSSGNLE HWKMQQQFPN FLGGFDPSNS PSSYPFQGGV HEAVQYLGGV GL*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00483DAPTransfer from AT5G02460Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400015687
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755211e-140HG975521.1 Solanum lycopersicum chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006341037.11e-142PREDICTED: dof zinc finger protein DOF2.4-like
TrEMBLM1AHM80.0M1AHM8_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000230331e-141(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02460.12e-44Dof family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]