PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400015671
Common NameLOC102603790
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB
Protein Properties Length: 537aa    MW: 59412.3 Da    PI: 7.595
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400015671genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding513.3e-1659104147
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                           +g WT+eEd+ l++av  + g++Wk+Ia+ ++  R++ qc +rwqk+
  PGSC0003DMP400015671  59 KGGWTPEEDDTLKRAVSVYRGKCWKKIAEFFP-DRSEVQCLHRWQKV 104
                           688*****************************.************96 PP
2Myb_DNA-binding53.26.7e-17111157148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                           +g+WT eEd++++++v+++G+  W+ Ia+ +  gR +kqc++rw+++l
  PGSC0003DMP400015671 111 KGPWTREEDDKIIELVAKYGPIKWSVIAKSLT-GRIGKQCRERWHNHL 157
                           79******************99*********9.*************97 PP
3Myb_DNA-binding54.42.9e-17163206146
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                           +++WT eE+  l+da++ +G++ W+ Ia+ ++ gRt++ +k++w++
  PGSC0003DMP400015671 163 KDAWTLEEERALIDAHRIHGNK-WAEIAKVLP-GRTDNGIKNHWNS 206
                           679*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.22454105IPR017930Myb domain
SMARTSM007171.4E-1458107IPR001005SANT/Myb domain
PfamPF002495.8E-1559104IPR001005SANT/Myb domain
SuperFamilySSF466891.29E-1460119IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.9E-2161117IPR009057Homeodomain-like
CDDcd001671.69E-1262105No hitNo description
PROSITE profilePS5129430.523106161IPR017930Myb domain
SuperFamilySSF466891.61E-30108204IPR009057Homeodomain-like
SMARTSM007173.0E-17110159IPR001005SANT/Myb domain
CDDcd001678.91E-15113157No hitNo description
PfamPF139212.4E-17114174No hitNo description
Gene3DG3DSA:1.10.10.601.5E-26118164IPR009057Homeodomain-like
PROSITE profilePS5129422.531162212IPR017930Myb domain
SMARTSM007172.5E-16162210IPR001005SANT/Myb domain
CDDcd001672.83E-12165208No hitNo description
Gene3DG3DSA:1.10.10.602.9E-23165212IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 537 aa     Download sequence    Send to blast
MDELKVEECC TENKQSAAAS SSSVSENSGS VTLRSPAVSS PTPASPTHRR TTGPIRRAKG  60
GWTPEEDDTL KRAVSVYRGK CWKKIAEFFP DRSEVQCLHR WQKVINPELV KGPWTREEDD  120
KIIELVAKYG PIKWSVIAKS LTGRIGKQCR ERWHNHLNPN IKKDAWTLEE ERALIDAHRI  180
HGNKWAEIAK VLPGRTDNGI KNHWNSSLKK KLDFYVATGN LPPSTGTAKA EELLVWSNKT  240
LEGAEVASSG TTDTCKIENG WQVAEISASN GGPQTESTDS EVVRLESQSP EEDAIQHIKP  300
STQSENRYEG WNIDSAVGRL QVFEAPFPCE IPTCGMLCYE PPRSESCIPL DSDLLNICRA  360
QCESDASPSP SPNGFFTPPS TKGRSLCAQT PESVLRIAAR SFPNTPSILR KRKTQGELST  420
PTNKMGKSDG DLCREKPIDA CDEIQYDSSH KSSMHNGVSS RNSFNGGLYN SQAFNASPPY  480
RLRSKRTSIF KSVEKQLQFA LNKEKHDTSN GFSDSTVNEI SHASKDCSQD TDKKVE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C5e-69582125159MYB PROTO-ONCOGENE PROTEIN
1h89_C5e-69582125159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds 5'-AACGG-3' motifs in gene promoters (By similarity). Transcription repressor that regulates organ growth. Binds to the promoters of G2/M-specific genes and to E2F target genes to prevent their expression in post-mitotic cells and to restrict the time window of their expression in proliferating cells (PubMed:26069325). {ECO:0000250|UniProtKB:Q94FL9, ECO:0000269|PubMed:26069325}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00482DAPTransfer from AT5G02320Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400015671
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by ethylene and salicylic acid (SA). {ECO:0000269|PubMed:16463103}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754480.0HG975448.1 Solanum pennellii chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006341026.10.0PREDICTED: uncharacterized protein LOC102603790 isoform X2
SwissprotQ6R0321e-143MB3R5_ARATH; Transcription factor MYB3R-5
TrEMBLM1AHL20.0M1AHL2_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000230120.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA54612437
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02320.21e-133myb domain protein 3r-5
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Kobayashi K, et al.
    Transcriptional repression by MYB3R proteins regulates plant organ growth.
    EMBO J., 2015. 34(15): p. 1992-2007
    [PMID:26069325]
  4. Chen P, et al.
    Arabidopsis R1R2R3-Myb proteins are essential for inhibiting cell division in response to DNA damage.
    Nat Commun, 2017. 8(1): p. 635
    [PMID:28935922]