PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PGSC0003DMP400015439

Common Name

PPS4

Organism

Solanum tuberosum

Taxonomic ID

4113

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

G2-like

Protein Properties

Length: 307aa MW: 33262.8 Da PI: 6.2452

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PGSC0003DMP400015439	genome	PGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	108	5.1e-34	19	73	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+rlrWt+eLHerFv+av+qLGG+++AtPk +l++m+v+gLt++hvkSHLQkYRl PGSC0003DMP400015439 19 KQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRL 73 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	14.485	16	76	IPR017930	Myb domain
SuperFamily	SSF46689	7.53E-18	18	73	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.1E-32	18	74	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.1E-25	19	74	IPR006447	Myb domain, plants
Pfam	PF00249	1.2E-9	21	72	IPR001005	SANT/Myb domain
Pfam	PF14379	2.9E-23	106	152	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 307 aa Download sequence Send to blast
MDPTNEGNNL NNNPSLASKQ RLRWTHELHE RFVDAVAQLG GPDRATPKGV LRVMGVQGLT 60 IYHVKSHLQK YRLAKYLPDS SSDGKQSDKK ESGDMLSSLD GSSTGVQINE ALKLQMEVQK 120 RLHEQLEVQR QLQLRIEAQG KYLKKIIEEQ QRLSGVLSEV PVSGVTPSAA GDNGVDSDNR 180 TDPGTPAPTS ESPHIDTSVQ EHARSKSLSI DQSFSSQHEP LTPDSGCRET SPINSSEGER 240 SSKKQRVGTS ATFTKADMLL PHQILESSLG SPYEQPNPVF LASDQFNLSS GLSLGNEGPN 300 VSGSNV*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	3e-24	19	76	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	3e-24	19	76	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	3e-24	19	76	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	3e-24	19	76	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
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Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00252	DAP	Transfer from AT2G01060	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PGSC0003DMP400015439

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB192880	0.0	AB192880.1 Solanum tuberosum PPS4 mRNA for MYB-CC type transfactor, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001275151.1	0.0	myb family transcription factor APL-like
Refseq	XP_006350320.1	0.0	PREDICTED: myb family transcription factor APL-like isoform X1
Swissprot	Q9SJW0	1e-122	PHL7_ARATH; Myb family transcription factor PHL7
TrEMBL	Q3LHL3	0.0	Q3LHL3_SOLTU; MYB-CC type transfactor
STRING	PGSC0003DMT400022661	0.0	(Solanum tuberosum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01060.1	5e-88	G2-like family protein

Link Out ? help Back to Top
Phytozome	PGSC0003DMP400015439
Entrez Gene	102596230

Publications ? help Back to Top
Katou S, et al. Involvement of PPS3 phosphorylated by elicitor-responsive mitogen-activated protein kinases in the regulation of plant cell death. Plant Physiol., 2005. 139(4): p. 1914-26 [PMID:16306147] Xu X, et al. Genome sequence and analysis of the tuber crop potato. Nature, 2011. 475(7355): p. 189-95 [PMID:21743474]