PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400015397 | ||||||||
Common Name | LOC102591265 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | MYB | ||||||||
Protein Properties | Length: 298aa MW: 34370.2 Da PI: 7.1003 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56.1 | 8.5e-18 | 26 | 73 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT eEd l ++++ +G g+W++ ar+ g++Rt+k+c++rw++yl PGSC0003DMP400015397 26 RGPWTVEEDFTLMNYIAHHGEGRWNSLARCAGLKRTGKSCRLRWLNYL 73 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 51.4 | 2.4e-16 | 79 | 122 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T eE++l+++++ ++G++ W++Ia++++ gRt++++k++w++ PGSC0003DMP400015397 79 RGNITLEEQLLILELHSRWGNR-WSKIAQHLP-GRTDNEIKNYWRT 122 7999******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.869 | 21 | 73 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 6.36E-31 | 23 | 120 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.5E-14 | 25 | 75 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.3E-16 | 26 | 73 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.7E-22 | 27 | 80 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.61E-10 | 28 | 73 | No hit | No description |
PROSITE profile | PS51294 | 23.246 | 74 | 128 | IPR017930 | Myb domain |
SMART | SM00717 | 1.3E-14 | 78 | 126 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.9E-15 | 79 | 122 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.5E-23 | 81 | 127 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.71E-7 | 99 | 122 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 298 aa Download sequence Send to blast |
MDHQHVKAGL SRVDANKNED DMDLRRGPWT VEEDFTLMNY IAHHGEGRWN SLARCAGLKR 60 TGKSCRLRWL NYLRPDVRRG NITLEEQLLI LELHSRWGNR WSKIAQHLPG RTDNEIKNYW 120 RTRVQKHAKQ LKCDVNSKQF KDTMRYLWMP RLVERIQAAA AGASTSKVID PQTINPNMVQ 180 IDHNNNNTNS STATASSENS FVSDLTDCCY NYPQQQQDYF QVNQSISSQL IGESLISPTG 240 YFHHALEFQG AAAADMDHQQ NTTQWMDGAN FSDNLWNIED MWFLQQQLNN NNNNNVV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 2e-24 | 23 | 120 | 24 | 120 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400015397 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salt (NaCl). {ECO:0000269|PubMed:16463103}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975440 | 4e-82 | HG975440.1 Solanum pennellii chromosome ch01, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006337993.1 | 0.0 | PREDICTED: transcription factor MYB108-like | ||||
Swissprot | Q9FGY3 | 2e-93 | MYB78_ARATH; Transcription factor MYB78 | ||||
TrEMBL | M1AGY3 | 0.0 | M1AGY3_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400022600 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1397 | 23 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G49620.1 | 6e-90 | myb domain protein 78 |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400015397 |
Entrez Gene | 102591265 |
Publications ? help Back to Top | |||
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