PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PGSC0003DMP400015357 | ||||||||
Common Name | LOC102579893 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 130aa MW: 14357.2 Da PI: 9.3648 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 55 | 2e-17 | 6 | 55 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+G+r++k +g+Wv+eIr+p g + r +lg++ ++e Aa a++ a +l+ PGSC0003DMP400015357 6 KYRGIRRRK-WGKWVSEIRVP---G-SsERLWLGTYTSPEAAAIAHDIAYYCLRP 55 8*****998.**********8...4.34************************985 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.31E-23 | 5 | 66 | No hit | No description |
PROSITE profile | PS51032 | 20.903 | 6 | 66 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.2E-24 | 6 | 67 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.05E-16 | 6 | 66 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.2E-23 | 6 | 72 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 5.9E-9 | 6 | 53 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.7E-9 | 7 | 18 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.7E-9 | 29 | 45 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 130 aa Download sequence Send to blast |
MSSGAKYRGI RRRKWGKWVS EIRVPGSSER LWLGTYTSPE AAAIAHDIAY YCLRPESSSL 60 HKLNFPSMLP PNVQPGMSPT SVQKVASDAA MAIDAQFLTI PTPAQQHRQT ADNYGQNQGL 120 NISVEDYQY* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | PGSC0003DMP400015357 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | HG975513 | 1e-169 | HG975513.1 Solanum lycopersicum chromosome ch01, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006337962.1 | 2e-93 | PREDICTED: ethylene-responsive transcription factor ERF020 | ||||
Swissprot | Q9C9I8 | 3e-41 | ERF20_ARATH; Ethylene-responsive transcription factor ERF020 | ||||
TrEMBL | M1AGV8 | 6e-92 | M1AGV8_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400022528 | 1e-92 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA9494 | 20 | 28 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G71520.1 | 1e-43 | ERF family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | PGSC0003DMP400015357 |
Entrez Gene | 102579893 |
Publications ? help Back to Top | |||
---|---|---|---|
|