PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400015271
Common NameLOC102579549
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB
Protein Properties Length: 329aa    MW: 36882.2 Da    PI: 7.808
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400015271genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding612.5e-191461148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                          rg WT+eEd +l  +++q+G+++W++I+++ g+ R++k+c++rw +yl
  PGSC0003DMP400015271 14 RGQWTPEEDHKLSSYIAQHGTRNWRLIPKHAGLQRCGKSCRLRWTNYL 61
                          89********************************************97 PP
2Myb_DNA-binding44.53.6e-1468110246
                           SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
       Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                           g +++ E++ +v ++  lG++ W+ Ia+ ++ gRt++++k++w++
  PGSC0003DMP400015271  68 GQFSEGEEQTIVTLHSVLGNR-WSVIAAQLP-GRTDNDVKNHWNT 110
                           7899*****************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.0E-26564IPR009057Homeodomain-like
PROSITE profilePS5129426.91965IPR017930Myb domain
SuperFamilySSF466892.97E-2911108IPR009057Homeodomain-like
SMARTSM007173.6E-131363IPR001005SANT/Myb domain
PfamPF002497.4E-181461IPR001005SANT/Myb domain
CDDcd001672.54E-111761No hitNo description
Gene3DG3DSA:1.10.10.601.8E-2365116IPR009057Homeodomain-like
PROSITE profilePS5129419.59166116IPR017930Myb domain
SMARTSM007172.4E-1266114IPR001005SANT/Myb domain
PfamPF002491.2E-1268110IPR001005SANT/Myb domain
CDDcd001675.95E-970112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010090Biological Processtrichome morphogenesis
GO:0048658Biological Processanther wall tapetum development
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MGRIPCCEKD NVKRGQWTPE EDHKLSSYIA QHGTRNWRLI PKHAGLQRCG KSCRLRWTNY  60
LRPDLKHGQF SEGEEQTIVT LHSVLGNRWS VIAAQLPGRT DNDVKNHWNT KLKKKLSGMG  120
IDPVTHKPFS HLISEIATTL SPPQVPHLAE AALGCFKDEM LHLLTKKRLG FQFHQQFTNM  180
TITHNNAPST SHVKHEENNN YKDNTIEKIK YGLSRAIKES DKNWETSVGG ATSSNFHDNT  240
GFSNYNFGNL LNDEEGSPWN QSLCSGSTCT AGGGELQQQQ QNKKISNENC EDSGKEIVAT  300
TRNGSTTMFN SDCVLWDISS DDLMNPMV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-29141167108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtEssential for tapetum development in anthers and microsporogenesis. May regulate the timing of tapetal programmed cell death (PCD) which is critical for pollen development. {ECO:0000269|PubMed:22086333}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00564DAPTransfer from AT5G56110Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400015271
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ4157550.0HQ415755.1 Lycium barbarum putative Myb103 transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006352557.10.0PREDICTED: transcription factor MYB21
SwissprotQ7XQN11e-117MYB80_ORYSJ; Transcription factor MYB80
TrEMBLM1AGN40.0M1AGN4_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000224020.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56110.11e-114myb domain protein 103
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]