PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400014817
Common NameLOC102590638
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family GRAS
Protein Properties Length: 560aa    MW: 61716.2 Da    PI: 5.8768
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400014817genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS398.47.5e-12219855910374
                  GRAS  10 eavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 
                           + vs+ d ++ + l++ l++ +s +g+pmqRl ay++e+L+ar+++s+s++yk l+++e +    se +++++++++++P+++f++  a
  PGSC0003DMP400014817 198 QKVSDADVTARDVLINVLEQKVSVSGEPMQRLSAYMLEGLKARIYSSGSTIYKMLKCKEPT---GSELISYMQVLYHICPYYRFAYTSA 283
                           5688889999999999********************************************9...9************************ PP

                  GRAS  99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakr 185
                           N  I ea+ +e+r+HiiDf+i qG QW+ L+q La  p+gpps+ iTgv++++s   +   l+ +gerLak Ae++gvpfef++ +a +
  PGSC0003DMP400014817 284 NVVIEEAMRNESRIHIIDFQIAQGSQWVFLMQNLAHWPGGPPSVHITGVDDSQSAhaRGGGLHLVGERLAKAAESCGVPFEFHA-AAIS 371
                           ***************************************************9988889999***********************.8889 PP

                  GRAS 186 ledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleak 274
                             +++le+L++++gEalaVn+ + lh+++desv+++++rd++L+lvkslsPk+v++veqe+++n++ Fl rf e+l+yy+a+f+s++a+
  PGSC0003DMP400014817 372 GCEVQLENLQIRHGEALAVNFPYVLHHMPDESVTTANHRDRLLRLVKSLSPKIVTLVEQESNTNTSAFLPRFRETLDYYTAMFESIDAG 460
                           99*************************************************************************************** PP

                  GRAS 275 lpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWk 363
                            p ++++ri+ E+++++r+ivn++aceg++r+erhe ++kW++rl++aGF+p pls ++ + ++ +l++++ + yr+ e++g+l+lgWk
  PGSC0003DMP400014817 461 RPGDDKQRINAEAHCVARDIVNIIACEGSDRVERHEVFGKWSMRLTMAGFTPCPLSPSVGEAINGVLKEFSPN-YRIAENKGALYLGWK 548
                           ***********************************************************************55.*************** PP

                  GRAS 364 drpLvsvSaWr 374
                           +r+L + SaWr
  PGSC0003DMP400014817 549 NRALATSSAWR 559
                           **********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098560.307144540IPR005202Transcription factor GRAS
PfamPF035142.6E-119198559IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 560 aa     Download sequence    Send to blast
MHTSQIPQSS GGVHKLCHQP TTNFEQYYSP YHVVNNNSSD TSSSGTQLSY QTQNEKFFTL  60
DSLPDAGYVS YDSPPAVSVS SNWSPFSPQC SQSYISDQHH SSDNTYGSPL SGCSVINDGN  120
ELKHVLREMA NNLLGPGSDI DEDSSCSFNG EVSKPSKWNR VLEIAPSLDM KELLLACAEA  180
ISDVEVTARD AQMNVLGQKV SDADVTARDV LINVLEQKVS VSGEPMQRLS AYMLEGLKAR  240
IYSSGSTIYK MLKCKEPTGS ELISYMQVLY HICPYYRFAY TSANVVIEEA MRNESRIHII  300
DFQIAQGSQW VFLMQNLAHW PGGPPSVHIT GVDDSQSAHA RGGGLHLVGE RLAKAAESCG  360
VPFEFHAAAI SGCEVQLENL QIRHGEALAV NFPYVLHHMP DESVTTANHR DRLLRLVKSL  420
SPKIVTLVEQ ESNTNTSAFL PRFRETLDYY TAMFESIDAG RPGDDKQRIN AEAHCVARDI  480
VNIIACEGSD RVERHEVFGK WSMRLTMAGF TPCPLSPSVG EAINGVLKEF SPNYRIAENK  540
GALYLGWKNR ALATSSAWR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A2e-5119855827377Protein SCARECROW
5b3h_D2e-5119855827377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that acts as a positive regulator of continuous red light signals downstream of phytochrome B (phyB). Required for the regulation of hypocotyl elongation during de-etiolation. May be required to modulate phytochrome A (phyA) signal transduction in a phyB-independent way. {ECO:0000269|PubMed:16680434}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400014817
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By osmotic and cold stresses, and UV-A/B. {ECO:0000269|PubMed:16680434}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754440.0HG975444.1 Solanum pennellii chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006365847.10.0PREDICTED: scarecrow-like protein 13
RefseqXP_006365848.10.0PREDICTED: scarecrow-like protein 13
SwissprotQ9M0M50.0SCL13_ARATH; Scarecrow-like protein 13
TrEMBLM1AFN30.0M1AFN3_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000217480.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA68124111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17230.10.0SCARECROW-like 13
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]