PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400014748
Common NameLOC102592272
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family G2-like
Protein Properties Length: 499aa    MW: 56581.8 Da    PI: 8.8617
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400014748genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like106.12e-33128182155
               G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                           kprl+Wtp+LHerF+eav+qLGG++kAtPk++l+lm+++gLtl+h+kSHLQkYRl
  PGSC0003DMP400014748 128 KPRLKWTPDLHERFIEAVNQLGGADKATPKSVLKLMGIQGLTLYHLKSHLQKYRL 182
                           79****************************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.38125185IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.9E-31126183IPR009057Homeodomain-like
SuperFamilySSF466891.18E-16127183IPR009057Homeodomain-like
TIGRFAMsTIGR015579.2E-24128183IPR006447Myb domain, plants
PfamPF002493.2E-10130181IPR001005SANT/Myb domain
PfamPF143791.4E-24226273IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 499 aa     Download sequence    Send to blast
MLHLDPSLFL FPFAYKSSLA TSLICEVVQL RTYIKAVVNS SLEPSIRSNN NIIVWRIQKN  60
HDSYLKGKTR LKSSTADHFQ KARKMYHHHH QEKSMHPSTR MSVPERHLFL QGGNGNGDSG  120
LVLSTDAKPR LKWTPDLHER FIEAVNQLGG ADKATPKSVL KLMGIQGLTL YHLKSHLQKY  180
RLSKNLHGQA NASGTNKAVA GVERISENSA TCMSNPSMVP QPNKNIQISE AIQMQIEVQR  240
RLHEQLEVQR HLQLRIEAQG KYLQSVLEKA QETLGRQNME TVGLEAVKVQ LSEFVSKASN  300
QCLNSPFPDI KELSGFHSQH TQATQPTDRS IDSCLTSRDG SLRDNTMHDN QIGLRPFDFT  360
PSIECKDIEN DARLQQTELR WCDNLKENRR LFSPMNEGRE KTFTRETNCN NLSMSIGLQD  420
EKLNGSMNHS DGSFNGTERD VKLFHQVTNR SESVPQRHKS SQEYKLSYFQ PKLDLNMHDE  480
TDAASSCKQF DLNGFSWG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A8e-22127184158Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B8e-22127184158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A9e-22128184157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B9e-22128184157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C9e-22128184157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D9e-22128184157Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A8e-22127184158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C8e-22127184158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D8e-22127184158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F8e-22127184158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H8e-22127184158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J8e-22127184158Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may act on the GAL1 promoter (PubMed:12008900). Acts redundantly with MYR2 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269|PubMed:21255164, ECO:0000305|PubMed:12008900}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400014748
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2449200.0AC244920.2 Solanum lycopersicum strain Heinz 1706 chromosome 10 clone sle-6e17 map 10, complete sequence.
GenBankHG9755220.0HG975522.1 Solanum lycopersicum chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015164624.10.0PREDICTED: uncharacterized protein LOC102592272 isoform X3
SwissprotQ9FK471e-129PHLA_ARATH; Myb-related protein 1
TrEMBLM1AFH50.0M1AFH5_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000216530.0(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18240.41e-131myb-related protein 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]