PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400014747 | ||||||||
Common Name | LOC102592272 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | G2-like | ||||||||
Protein Properties | Length: 501aa MW: 56752 Da PI: 8.8617 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 106.1 | 2e-33 | 128 | 182 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl+Wtp+LHerF+eav+qLGG++kAtPk++l+lm+++gLtl+h+kSHLQkYRl PGSC0003DMP400014747 128 KPRLKWTPDLHERFIEAVNQLGGADKATPKSVLKLMGIQGLTLYHLKSHLQKYRL 182 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.38 | 125 | 185 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.9E-31 | 126 | 183 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.18E-16 | 127 | 183 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 9.2E-24 | 128 | 183 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 3.2E-10 | 130 | 181 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 1.4E-24 | 228 | 275 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 501 aa Download sequence Send to blast |
MLHLDPSLFL FPFAYKSSLA TSLICEVVQL RTYIKAVVNS SLEPSIRSNN NIIVWRIQKN 60 HDSYLKGKTR LKSSTADHFQ KARKMYHHHH QEKSMHPSTR MSVPERHLFL QGGNGNGDSG 120 LVLSTDAKPR LKWTPDLHER FIEAVNQLGG ADKATPKSVL KLMGIQGLTL YHLKSHLQKY 180 RLSKNLHGQA NASGTNKAVA VAGVERISEN SATCMSNPSM VPQPNKNIQI SEAIQMQIEV 240 QRRLHEQLEV QRHLQLRIEA QGKYLQSVLE KAQETLGRQN METVGLEAVK VQLSEFVSKA 300 SNQCLNSPFP DIKELSGFHS QHTQATQPTD RSIDSCLTSR DGSLRDNTMH DNQIGLRPFD 360 FTPSIECKDI ENDARLQQTE LRWCDNLKEN RRLFSPMNEG REKTFTRETN CNNLSMSIGL 420 QDEKLNGSMN HSDGSFNGTE RDVKLFHQVT NRSESVPQRH KSSQEYKLSY FQPKLDLNMH 480 DETDAASSCK QFDLNGFSWG * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 8e-22 | 127 | 184 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 8e-22 | 127 | 184 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 9e-22 | 128 | 184 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 9e-22 | 128 | 184 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 9e-22 | 128 | 184 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 9e-22 | 128 | 184 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 8e-22 | 127 | 184 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 8e-22 | 127 | 184 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 8e-22 | 127 | 184 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 8e-22 | 127 | 184 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 8e-22 | 127 | 184 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 8e-22 | 127 | 184 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that may act on the GAL1 promoter (PubMed:12008900). Acts redundantly with MYR2 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269|PubMed:21255164, ECO:0000305|PubMed:12008900}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400014747 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC244920 | 0.0 | AC244920.2 Solanum lycopersicum strain Heinz 1706 chromosome 10 clone sle-6e17 map 10, complete sequence. | |||
GenBank | HG975522 | 0.0 | HG975522.1 Solanum lycopersicum chromosome ch10, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006338933.2 | 0.0 | PREDICTED: uncharacterized protein LOC102592272 isoform X1 | ||||
Swissprot | Q9FK47 | 1e-130 | PHLA_ARATH; Myb-related protein 1 | ||||
TrEMBL | M1AFH4 | 0.0 | M1AFH4_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400021653 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2946 | 24 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18240.4 | 1e-132 | myb-related protein 1 |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400014747 |
Entrez Gene | 102592272 |
Publications ? help Back to Top | |||
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