PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400014739
Common NameLOC102595265
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family C2H2
Protein Properties Length: 288aa    MW: 31078 Da    PI: 4.5471
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400014739genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.20.00057262283323
                           ETTTTEEESSHHHHHHHHHH.T CS
               zf-C2H2   3 CpdCgksFsrksnLkrHirt.H 23 
                           C+ C+++F +   L++H +  H
  PGSC0003DMP400014739 262 CKTCNRTFGSENALESHSKAkH 283
                           *****************88777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.596260287IPR007087Zinc finger, C2H2
PfamPF139121.1E-5262284IPR007087Zinc finger, C2H2
PROSITE patternPS000280262283IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009294Biological ProcessDNA mediated transformation
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0010162Biological Processseed dormancy process
GO:0005730Cellular Componentnucleolus
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MEFWGAEVKS GQPLSVQPGD DMILHLSQAS LGEVKKDKGS EPVCLSVTID GKKLVLGTLS  60
SDKLPQQQFD LVFDRDFELS HNWKNGSIYF FGYKAANPFE DEEDVDEDED ESDEEIPLTI  120
ANNGKTEAKA IAKDSASTKQ KVRVVEFSKV AKAEDGDEST DESADEDDSM MGEDEEGDSD  180
EDQSDESEEG TPKKAEPSRK RPADSAAKTP VPDKKTKFLT PQKTDGKKGA VHVATPHPSK  240
QAGKTPGNKP NQTPKSGGSL ACKTCNRTFG SENALESHSK AKHSVGK*
Functional Description ? help Back to Top
Source Description
UniProtMediates the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400014739
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By fertilization. {ECO:0000269|PubMed:15082924}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0140290.0BT014029.1 Lycopersicon esculentum clone 133091F, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006338944.10.0PREDICTED: histone deacetylase HDT1-like
SwissprotQ6V9I61e-111HDT1_SOLCH; Histone deacetylase HDT1
TrEMBLM1AFH00.0M1AFH0_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000216440.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31761823
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G44750.28e-35histone deacetylase 3
Publications ? help Back to Top
  1. Lagacé M,Chantha SC,Major G,Matton DP
    Fertilization induces strong accumulation of a histone deacetylase (HD2) and of other chromatin-remodeling proteins in restricted areas of the ovules.
    Plant Mol. Biol., 2003. 53(6): p. 759-69
    [PMID:15082924]
  2. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]