PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400014704
Common NameLOC102598787
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 263aa    MW: 29886.3 Da    PI: 6.937
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400014704genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH361.2e-1177124254
                           HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                   HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                            ++h+e+ErrRR+riNs ++ Lr+ll  +      Kl+Ka+ L k+v+ +++L
  PGSC0003DMP400014704  77 AKNHKEAERRRRERINSHLHSLRTLLSCN-----SKLDKASLLAKVVQRVREL 124
                           579***********************997.....7************999887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.7E-1366132IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.47875124IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.4E-1275136IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.3E-978124IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.8E-1081130IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042538Biological Processhyperosmotic salinity response
GO:0005634Cellular Componentnucleus
GO:0009941Cellular Componentchloroplast envelope
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MQQQQDFQEN LESCNYFSKN KSSSSDNNMM GDYYGFDIEA IKSFCSSSPF YPHDHHVEFQ  60
ETIESNNNNN NSPEARAKNH KEAERRRRER INSHLHSLRT LLSCNSKLDK ASLLAKVVQR  120
VRELKEQTSQ IMQSETNLLF PSETDEISVL SSNDCLADGR LLIKASLCCE DRSDLIPDLI  180
ETLKSLGLSP IRAEMVTLGG RIRNVIVLAV DHKESNNNNT DHDESSLLFL RDALRSIVQR  240
SSYGTSERGK RRRVLGQGTR NY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17587RAKNHKEAERRRR
28388ERRRRE
3249253KRRRV
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400014704
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755220.0HG975522.1 Solanum lycopersicum chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006362291.20.0PREDICTED: transcription factor bHLH106
SwissprotO806742e-54BH106_ARATH; Transcription factor bHLH106
TrEMBLM1AFE20.0M1AFE2_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000215990.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA128411718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41130.17e-57bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]