PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400014699 | ||||||||
Common Name | LOC102589175 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | E2F/DP | ||||||||
Protein Properties | Length: 355aa MW: 38562.9 Da PI: 7.0284 | ||||||||
Description | E2F/DP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | E2F_TDP | 87.2 | 1.2e-27 | 99 | 181 | 2 | 71 |
E2F_TDP 2 keksLrlltqkflklleksee.givtlnevakeLvse................dvknkrRRiYDilNVLealnliekkekneirwkg 71 ++++Lr++++k ++ek+e+ g++t+neva+eLv+e d+kn+rRR+YD+lNVL+a+++i+k +k+ei+wkg PGSC0003DMP400014699 99 SGRGLRQFSMK---VCEKVESkGRTTYNEVADELVAEfsdatnsvagpdqkqyDEKNIRRRVYDALNVLMAMDIISK-DKKEIQWKG 181 689********...*****999*******************************************************.*******98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF009404 | 2.3E-128 | 7 | 354 | IPR015648 | Transcription factor DP |
Gene3D | G3DSA:1.10.10.10 | 1.0E-45 | 94 | 186 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM01372 | 2.7E-35 | 98 | 181 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
Pfam | PF02319 | 4.8E-25 | 100 | 181 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
SuperFamily | SSF46785 | 2.99E-21 | 101 | 182 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
CDD | cd14458 | 1.80E-42 | 187 | 289 | IPR014889 | Transcription factor DP, C-terminal |
SuperFamily | SSF144074 | 2.88E-42 | 188 | 313 | No hit | No description |
SMART | SM01138 | 1.3E-66 | 188 | 352 | IPR014889 | Transcription factor DP, C-terminal |
Pfam | PF08781 | 1.9E-40 | 189 | 299 | IPR014889 | Transcription factor DP, C-terminal |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0042023 | Biological Process | DNA endoreduplication | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005667 | Cellular Component | transcription factor complex | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 355 aa Download sequence Send to blast |
MLNNLEDGGK NPSEVSRGAN GRGGGGTRSW GTTVSGQSVS TSSSIGSPSS RSEAAMATPA 60 SDNTFLRLNN LDIHADDAGS QGTAGKKKRA QRATGGDKSG RGLRQFSMKV CEKVESKGRT 120 TYNEVADELV AEFSDATNSV AGPDQKQYDE KNIRRRVYDA LNVLMAMDII SKDKKEIQWK 180 GLPRTDANDI EELKTERLNL RNRIEKKAAY LEELEDQYVG LQNLIKRNDQ LYGSGNAPSG 240 GVALPFILVQ TRPHATVEVE ISEDMQLVHF DFNSTPFELH DDNYILKAMN FCGRPNDSAV 300 PQNLSADGGE GPSSRMANMF QHHIAHPSVP NSSGKLPTSP PLPGILKARV KHEH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1cf7_B | 9e-40 | 92 | 187 | 1 | 94 | PROTEIN (TRANSCRIPTION FACTOR DP-2) |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400014699 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC684558 | 0.0 | KC684558.1 Solanum lycopersicum transcription factor DP/E2 dimerization partner-like protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006362267.1 | 0.0 | PREDICTED: transcription factor-like protein DPB isoform X2 | ||||
Swissprot | Q9FNY2 | 1e-157 | DPB_ARATH; Transcription factor-like protein DPB | ||||
TrEMBL | M1AFD7 | 0.0 | M1AFD7_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400021592 | 0.0 | (Solanum tuberosum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G03415.1 | 1e-144 | Transcription factor DP |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400014699 |
Entrez Gene | 102589175 |
Publications ? help Back to Top | |||
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