PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400014652
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ERF
Protein Properties Length: 270aa    MW: 30458.2 Da    PI: 6.9751
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400014652genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.21.5e-162171255
                   AP2  2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55
                          ++ GVr+++ +g+W AeI+d      k+ r +lg+f tae+Aa+a+++a+  l+g
  PGSC0003DMP400014652 21 KFVGVRQRS-SGKWIAEIKDT---ThKKIRMWLGTFETAEDAARAYDQAACLLRG 71
                          799***999.7*********3...2446**********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003802.5E-332185IPR001471AP2/ERF domain
CDDcd000181.20E-272178No hitNo description
SuperFamilySSF541712.75E-192179IPR016177DNA-binding domain
PfamPF008477.8E-112171IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.9E-272179IPR001471AP2/ERF domain
PROSITE profilePS5103219.2822179IPR001471AP2/ERF domain
PRINTSPR003672.6E-72233IPR001471AP2/ERF domain
PRINTSPR003672.6E-74561IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000302Biological Processresponse to reactive oxygen species
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0035865Biological Processcellular response to potassium ion
GO:0048528Biological Processpost-embryonic root development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MKKVTKSIKG RKRSNNSNSN KFVGVRQRSS GKWIAEIKDT THKKIRMWLG TFETAEDAAR  60
AYDQAACLLR GSNTRTNFVT TRVSADSQLA YRIRNLIDSK KIAKQNKQGN SVFGSTCSEK  120
IQESHEKVLK LCDDNNLYKP TTIATTMTQS QTSCDRQYES SLTTCHHLNS SDADNNDFYK  180
PDMMSCSSSC TSQPQVSWGF EFAEELLDFP IMDESISEMG CTEFERMKVE RQISASLYAV  240
NGVQEYMENV HDIDDLSLWD LPPLCSLLS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-152278359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A2e-152278662ATERF1
3gcc_A2e-152278662ATERF1
5wx9_A9e-151378671Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the symbiotic nodule signaling pathway in response to rhizobial stimulation. Functions as a transcriptional regulator required for root infection by symbiotic rhizobia, infection thread (IT) formation, and nodule development. May coordinate these processes (PubMed:28503742, PubMed:28028038, PubMed:28068194). Functions downstream of the CCAMK-CYCLOPS complex (PubMed:28503742, PubMed:28028038). Probably not involved in arbuscular mycorrhizal (AM) symbiosis (PubMed:28068194). {ECO:0000269|PubMed:28028038, ECO:0000269|PubMed:28068194, ECO:0000269|PubMed:28503742}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00521DAPTransfer from AT5G19790Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400014652
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced in nodules 7 days after rhizobial inoculation. {ECO:0000269|PubMed:28028038, ECO:0000269|PubMed:28503742}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2378750.0AC237875.1 Solanum tuberosum cultivar RH89-039-16 clone RH168B16, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006362289.20.0PREDICTED: ethylene-responsive transcription factor RAP2-11-like
SwissprotA0A1X9PY883e-72ERN1_LOTJA; Ethylene-responsive transcription factor ERN1
TrEMBLM1AF960.0M1AF96_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000215350.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20182261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.14e-25related to AP2 11
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]
  2. Yano K, et al.
    Function and evolution of a Lotus japonicus AP2/ERF family transcription factor that is required for development of infection threads.
    DNA Res., 2017. 24(2): p. 193-203
    [PMID:28028038]
  3. Kawaharada Y,James EK,Kelly S,Sandal N,Stougaard J
    The Ethylene Responsive Factor Required for Nodulation 1 (ERN1) Transcription Factor Is Required for Infection-Thread Formation in Lotus japonicus.
    Mol. Plant Microbe Interact., 2017. 30(3): p. 194-204
    [PMID:28068194]
  4. Cerri MR, et al.
    The ERN1 transcription factor gene is a target of the CCaMK/CYCLOPS complex and controls rhizobial infection in Lotus japonicus.
    New Phytol., 2017. 215(1): p. 323-337
    [PMID:28503742]