PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400014652 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | ERF | ||||||||
Protein Properties | Length: 270aa MW: 30458.2 Da PI: 6.9751 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 52.2 | 1.5e-16 | 21 | 71 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 ++ GVr+++ +g+W AeI+d k+ r +lg+f tae+Aa+a+++a+ l+g PGSC0003DMP400014652 21 KFVGVRQRS-SGKWIAEIKDT---ThKKIRMWLGTFETAEDAARAYDQAACLLRG 71 799***999.7*********3...2446**********************99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 2.5E-33 | 21 | 85 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.20E-27 | 21 | 78 | No hit | No description |
SuperFamily | SSF54171 | 2.75E-19 | 21 | 79 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 7.8E-11 | 21 | 71 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.9E-27 | 21 | 79 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.282 | 21 | 79 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.6E-7 | 22 | 33 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.6E-7 | 45 | 61 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000302 | Biological Process | response to reactive oxygen species | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0035865 | Biological Process | cellular response to potassium ion | ||||
GO:0048528 | Biological Process | post-embryonic root development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 270 aa Download sequence Send to blast |
MKKVTKSIKG RKRSNNSNSN KFVGVRQRSS GKWIAEIKDT THKKIRMWLG TFETAEDAAR 60 AYDQAACLLR GSNTRTNFVT TRVSADSQLA YRIRNLIDSK KIAKQNKQGN SVFGSTCSEK 120 IQESHEKVLK LCDDNNLYKP TTIATTMTQS QTSCDRQYES SLTTCHHLNS SDADNNDFYK 180 PDMMSCSSSC TSQPQVSWGF EFAEELLDFP IMDESISEMG CTEFERMKVE RQISASLYAV 240 NGVQEYMENV HDIDDLSLWD LPPLCSLLS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 2e-15 | 22 | 78 | 3 | 59 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 2e-15 | 22 | 78 | 6 | 62 | ATERF1 |
3gcc_A | 2e-15 | 22 | 78 | 6 | 62 | ATERF1 |
5wx9_A | 9e-15 | 13 | 78 | 6 | 71 | Ethylene-responsive transcription factor ERF096 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the symbiotic nodule signaling pathway in response to rhizobial stimulation. Functions as a transcriptional regulator required for root infection by symbiotic rhizobia, infection thread (IT) formation, and nodule development. May coordinate these processes (PubMed:28503742, PubMed:28028038, PubMed:28068194). Functions downstream of the CCAMK-CYCLOPS complex (PubMed:28503742, PubMed:28028038). Probably not involved in arbuscular mycorrhizal (AM) symbiosis (PubMed:28068194). {ECO:0000269|PubMed:28028038, ECO:0000269|PubMed:28068194, ECO:0000269|PubMed:28503742}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00521 | DAP | Transfer from AT5G19790 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400014652 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced in nodules 7 days after rhizobial inoculation. {ECO:0000269|PubMed:28028038, ECO:0000269|PubMed:28503742}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC237875 | 0.0 | AC237875.1 Solanum tuberosum cultivar RH89-039-16 clone RH168B16, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006362289.2 | 0.0 | PREDICTED: ethylene-responsive transcription factor RAP2-11-like | ||||
Swissprot | A0A1X9PY88 | 3e-72 | ERN1_LOTJA; Ethylene-responsive transcription factor ERN1 | ||||
TrEMBL | M1AF96 | 0.0 | M1AF96_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400021535 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2018 | 22 | 61 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G19790.1 | 4e-25 | related to AP2 11 |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400014652 |
Publications ? help Back to Top | |||
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