PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400014630 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | MYB_related | ||||||||
Protein Properties | Length: 193aa MW: 21982.8 Da PI: 9.5826 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.2 | 1.4e-16 | 11 | 56 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T eE e ++ ++q+G++ W+tIa +++ gRt+++++++++++l PGSC0003DMP400014630 11 RGPFTMEERETVIKMHQQHGNR-WATIAGKLP-GRTDNEVRNFFHTHL 56 89********************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 8.28E-16 | 3 | 64 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.1E-23 | 4 | 60 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 22.519 | 6 | 60 | IPR017930 | Myb domain |
SMART | SM00717 | 2.1E-14 | 10 | 58 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.8E-14 | 11 | 56 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.19E-11 | 13 | 56 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 193 aa Download sequence Send to blast |
MDDYLRPDVK RGPFTMEERE TVIKMHQQHG NRWATIAGKL PGRTDNEVRN FFHTHLKKHL 60 GQINNNIDAP VKSRRARKSK KKSSKPQEKP QLFVDISKTW SNMNTTNLMI SPMGGSSSLS 120 SSSIITFDQN EKIDEPNPMI DMEKMVILES NPAASTHHHQ SSSHSNIDSF DQFVDTTSFW 180 LHLLDDANRI IL* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400014630 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975442 | 6e-40 | HG975442.1 Solanum pennellii chromosome ch03, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006358201.1 | 1e-106 | PREDICTED: transcription factor MYB82-like | ||||
TrEMBL | M1AF74 | 1e-140 | M1AF74_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400021503 | 1e-141 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G79180.1 | 2e-26 | myb domain protein 63 |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400014630 |
Publications ? help Back to Top | |||
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