PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400014629 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | MYB_related | ||||||||
Protein Properties | Length: 198aa MW: 22608.5 Da PI: 9.8468 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 48.5 | 2e-15 | 10 | 55 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T eE e ++ +qlG++ W+tIa +++ gRt++++k++++++l PGSC0003DMP400014629 10 RGPFTMEERETVIKMYQQLGNR-WATIAGKLP-GRTDNEVKNFFHTHL 55 89********************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 6.96E-16 | 1 | 61 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 5.4E-23 | 1 | 59 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 20.957 | 5 | 59 | IPR017930 | Myb domain |
SMART | SM00717 | 6.9E-13 | 9 | 57 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.5E-12 | 10 | 55 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.16E-9 | 12 | 55 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 198 aa Download sequence Send to blast |
MNYLRPDVKR GPFTMEERET VIKMYQQLGN RWATIAGKLP GRTDNEVKNF FHTHLKKHLG 60 QIKNNNNNNI DAPVKSRRAR KPKKKSSKAQ EKPQLFVDIS ETWSNMNTTN LMISPMGGSS 120 SLSSSSIITF DQNEKIDEPN PMIDMEKTVL ILESNPAATT THHHQSSSHS NIDYFDQFVD 180 NTSFWLYLLN DANRIIL* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400014629 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975442 | 1e-35 | HG975442.1 Solanum pennellii chromosome ch03, complete genome. | |||
GenBank | HG975515 | 1e-35 | HG975515.1 Solanum lycopersicum chromosome ch03, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006358201.1 | 1e-145 | PREDICTED: transcription factor MYB82-like | ||||
TrEMBL | M1AF73 | 1e-145 | M1AF73_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400021501 | 1e-145 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23250.2 | 8e-26 | myb domain protein 15 |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400014629 |
Publications ? help Back to Top | |||
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