PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400014596 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | C2H2 | ||||||||
Protein Properties | Length: 193aa MW: 21847 Da PI: 8.8271 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.7 | 0.00038 | 46 | 68 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k+F + L H+ +H PGSC0003DMP400014596 46 FKCKKCKKRFESFQALGGHMTSH 68 89******************998 PP | |||||||
2 | zf-C2H2 | 12.3 | 0.0005 | 92 | 114 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cgk F L H+r+H PGSC0003DMP400014596 92 HECSICGKDFAIGQALGGHMRKH 114 78*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 5.71E-10 | 44 | 114 | No hit | No description |
SMART | SM00355 | 0.017 | 46 | 68 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 2.1E-10 | 46 | 69 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.66 | 46 | 73 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 48 | 68 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 6.2E-5 | 90 | 117 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 10.741 | 92 | 119 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.19 | 92 | 114 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 5.0E-10 | 92 | 117 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 94 | 114 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 193 aa Download sequence Send to blast |
MCTPSTTMDM KLKKSKEDEE SVEKFAMANC VDIMRRNESL GRPKLFKCKK CKKRFESFQA 60 LGGHMTSHKN RLNKLTTMST NGELLPVNLK KHECSICGKD FAIGQALGGH MRKHRDELNQ 120 LEHKKKQKLD ENLIKSTGEL SEALYDKTKL DETSQTDELV KALHEKTSLD STRRTLTLDL 180 NLTTDENELS TG* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400014596 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975442 | 1e-151 | HG975442.1 Solanum pennellii chromosome ch03, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015169285.1 | 1e-132 | PREDICTED: zinc finger protein ZAT8-like | ||||
TrEMBL | M1AF56 | 1e-136 | M1AF56_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400021456 | 1e-137 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA366 | 24 | 150 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28710.1 | 2e-17 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400014596 |
Publications ? help Back to Top | |||
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