PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400014476
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ERF
Protein Properties Length: 120aa    MW: 13695.9 Da    PI: 5.1529
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400014476genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2384.1e-126421655
                   AP2 16 vAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                          +AeIrdp+    r +r++lg+f tae+Aa+a+++a+ +++g
  PGSC0003DMP400014476  6 RAEIRDPR----RaARVWLGTFTTAEDAARAYDRAAIEFRG 42
                          69****82....48************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003805.3E-18156IPR001471AP2/ERF domain
PROSITE profilePS5103215.672150IPR001471AP2/ERF domain
SuperFamilySSF541714.05E-14650IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.108.6E-21750IPR001471AP2/ERF domain
PfamPF008476.3E-61342IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 120 aa     Download sequence    Send to blast
MGKIGRAEIR DPRRAARVWL GTFTTAEDAA RAYDRAAIEF RGPRAKLNFS FADYTSIQQH  60
NNTPLQLQQQ QSPPSQLQQG INTEEEEFWD QLMNSDNEIQ HYFNRESSDS ANGYIAHSF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400014476
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2448651e-143AC244865.2 Solanum lycopersicum strain Heinz 1706 chromosome 10 clone sle-14f4 map 10, complete sequence.
GenBankAC2457321e-143AC245732.3 Solanum lycopersicum strain Heinz 1706 chromosome 10 clone slm-42i2 map 10, complete sequence.
GenBankHG9755221e-143HG975522.1 Solanum lycopersicum chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004248735.15e-61ethylene-responsive transcription factor ERF109-like
TrEMBLM1AEV12e-83M1AEV1_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000212743e-84(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34410.15e-16redox responsive transcription factor 1
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]