PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PGSC0003DMP400014459 | ||||||||
Common Name | LOC102593812 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
|
||||||||
Family | HSF | ||||||||
Protein Properties | Length: 354aa MW: 40709.7 Da PI: 4.6477 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 114 | 9.5e-36 | 32 | 123 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgk 90 Fl+k+ye++ed++++e+isws++ nsf+v+d+++f++++Lp++Fkhsnf+SF+RQLn+YgF+kv+ ++ weF+++ F g+ PGSC0003DMP400014459 32 FLSKTYEMVEDSSTDEVISWSTTRNSFIVWDSHKFSTTLLPRFFKHSNFSSFIRQLNTYGFRKVDPDR---------WEFANEGFLGGQ 111 9****************************************************************999.........************ PP XXXXXXXXXXXX CS HSF_DNA-bind 91 kellekikrkks 102 k+ll++ikr+++ PGSC0003DMP400014459 112 KHLLKTIKRRRN 123 *********986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46785 | 1.63E-34 | 28 | 121 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 1.5E-60 | 28 | 121 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene3D | G3DSA:1.10.10.10 | 9.6E-38 | 28 | 121 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
PRINTS | PR00056 | 4.5E-19 | 32 | 55 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 3.7E-31 | 32 | 121 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 4.5E-19 | 70 | 82 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 71 | 95 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 4.5E-19 | 83 | 95 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009644 | Biological Process | response to high light intensity | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0010286 | Biological Process | heat acclimation | ||||
GO:0034605 | Biological Process | cellular response to heat | ||||
GO:0034620 | Biological Process | cellular response to unfolded protein | ||||
GO:0042542 | Biological Process | response to hydrogen peroxide | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0071456 | Biological Process | cellular response to hypoxia | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 354 aa Download sequence Send to blast |
MEEVVKVKVE EDGIPTAVLP MEGLHDVGPP PFLSKTYEMV EDSSTDEVIS WSTTRNSFIV 60 WDSHKFSTTL LPRFFKHSNF SSFIRQLNTY GFRKVDPDRW EFANEGFLGG QKHLLKTIKR 120 RRNVGQSMNQ QGSGACIEIG YYGMEEELER LKRDKNVLMT EIVKLRQQQQ STRNQIIAMG 180 EKIERQERKQ EQMMSFLAKI FSNPTFLQQY LDKHVQRKDK QRIEVGQKRR LTMTPSAENL 240 QDVATRSDHQ PMNYSSHQER EAELASIEML FSAAMDNESS SNVRSASVVT ANGTGPEDIW 300 EELFSEDLIS GDRAEEVLVV EQPEFDVEVE DLVAKTPEWG EELQDLVDQL DFL* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 4e-23 | 19 | 121 | 14 | 129 | Heat shock factor protein 1 |
5d5v_B | 4e-23 | 19 | 121 | 14 | 129 | Heat shock factor protein 1 |
5d5v_D | 4e-23 | 19 | 121 | 14 | 129 | Heat shock factor protein 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 114 | 120 | LKTIKRR |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | DNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription. {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | PGSC0003DMP400014459 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | X67601 | 0.0 | X67601.1 L.peruvianum Lp-hsf30 mRNA for heat stress transcription factor 30. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006351581.1 | 0.0 | PREDICTED: heat shock factor protein HSF30 isoform X1 | ||||
Swissprot | P41152 | 0.0 | HSF30_SOLPE; Heat shock factor protein HSF30 | ||||
TrEMBL | M1AET7 | 0.0 | M1AET7_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400021234 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA572 | 24 | 113 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G26150.1 | 1e-115 | heat shock transcription factor A2 |
Link Out ? help Back to Top | |
---|---|
Phytozome | PGSC0003DMP400014459 |
Entrez Gene | 102593812 |
Publications ? help Back to Top | |||
---|---|---|---|
|