PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400014411
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 373aa    MW: 42159.2 Da    PI: 4.8014
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400014411genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH20.87.2e-07336359629
                           HHHHHHHHHHHHHHHHHHHCTSCC CS
                   HLH   6 nerErrRRdriNsafeeLrellPk 29 
                            ++Er+RR+++N+++  Lr l+Pk
  PGSC0003DMP400014411 336 LMAERKRRKKLNERLYALRALVPK 359
                           589********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142159.4E-186153IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474591.11E-6330361IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS508889.68330372IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.41E-6332363No hitNo description
PfamPF000101.8E-4336359IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.4E-6337360IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009555Biological Processpollen development
GO:0048657Biological Processanther wall tapetum cell differentiation
GO:0005634Cellular Componentnucleus
GO:0000978Molecular FunctionRNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MELMHLMERL RPIMGLKSWD YCVLWKLSED QRFLEWICCC CGGAEKNMHS CEQEIFFPDS  60
STSTCRDVMF QHPTTTACDL LAQVPLSLAL DCGVYAQTLL SNQAKWMNFV SFSESNISNE  120
IMGTRALIPS PLGLLELFST QQLAEDEKVI EFVSAQCNIY LEQQAMMNST FSNGVQENTS  180
KPFPTEGDGD GDGDDHIKDS QNHYQQTVSP AATSDHLSYE FPLKRKQLDT CSMNFLPPFS  240
TYSTPEVDNN TGGNMLFNQS TSDATHFSEN RYMSEMDAYL QKQMMRSSST QAGIDDESVK  300
HDNGRSNSGS DSDQNEEEDD PKYRRRNGKG PQSKNLMAER KRRKKLNERL YALRALVPKI  360
SKVLLTFLFS VS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1323344RRRNGKGPQSKNLMAERKRRKK
2338345ERKRRKKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400014411
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754470.0HG975447.1 Solanum pennellii chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006351593.10.0PREDICTED: transcription factor ABORTED MICROSPORES isoform X1
RefseqXP_015166029.10.0PREDICTED: transcription factor ABORTED MICROSPORES isoform X1
TrEMBLM1AEP90.0M1AEP9_SOLTU; Uncharacterized protein
STRINGSolyc08g062780.1.10.0(Solanum lycopersicum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16910.18e-64bHLH family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]