PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400014389
Common NameLOC102582980
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 361aa    MW: 39675.2 Da    PI: 6.2971
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400014389genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.21.7e-09203250455
                           HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           +h+ +Er RR++iN ++  L+el+P +    +k    a++L + +++++sLq
  PGSC0003DMP400014389 203 SHSLAERARREKINARMKLLQELVPGC----NKISGTAMVLDEIINHVQSLQ 250
                           8*************************9....89999***************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.88E-15197268IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.21E-9197254No hitNo description
PROSITE profilePS5088814.634199249IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.2E-15199267IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.1E-7203250IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.2E-9205255IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MDNLIESIEA GEARSENCGA RMGEIGTGFH QFGEEILSVT SEGGSSFTAL LGLPPNQAVE  60
LLVQSPEADK MTSDKLAISE PHYRYPPPPI FPSDIALIDR ASKFSVFAAA GNSPESNSTL  120
SNSGSKSLFV KQEPIDSEFN HNSSPATSNP LVNQKSTKRK EREKKVKETS KKGKKSANDT  180
SEDGGEKLPY VHVRARRGQA TDSHSLAERA RREKINARMK LLQELVPGCN KISGTAMVLD  240
EIINHVQSLQ RQVEFLSMRL AAVNPRVDFN LDSLFAAERS GSHVESNLQD MVVPPIWAEG  300
QTSGNRNQYQ HLWHYEGFHQ PAWGRLEDNS SFVTPENSLL TYDSSANSAS LHPNQLKMEL  360
*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400014389
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2442980.0AC244298.9 Solanum lycopersicum strain Heinz 1706 chromosome 10 clone hba-22l14 map 10, complete sequence.
GenBankAC2445880.0AC244588.6 Solanum lycopersicum strain Heinz 1706 chromosome 10 clone hba-44j8 map 10, complete sequence.
GenBankHG9754490.0HG975449.1 Solanum pennellii chromosome ch10, complete genome.
GenBankHG9755220.0HG975522.1 Solanum lycopersicum chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006351217.10.0PREDICTED: transcription factor bHLH48-like
TrEMBLM1AEN90.0M1AEN9_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000211300.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40292342
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57800.26e-71bHLH family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]