PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PGSC0003DMP400014381 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 359aa MW: 40764.1 Da PI: 4.08 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 64.5 | 3.2e-20 | 15 | 135 | 3 | 128 |
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykv.ePwdLpkkvkaeekewyfFskrdkkyatgkrknr.atksgyWkatgkd 89 G+rF Ptde+l+ yL k v+++++ + + i+ d+y + +Pw+L e yfF++ +k +++ kr r + g Wk + k PGSC0003DMP400014381 15 LGVRFLPTDEQLI-SYLIKFVASNHFIC-NNIQFEDLYGSkKPWELM-----EAGTKYFFTQLKKLEPNHKRFIRtLVGGGSWKGQDKG 96 69***********.9**********988.77******98759****6.....34567******************778899******** PP NAM 90 kevlskkgelvglkktLvfy...kgrapkgektdWvmheyrl 128 k+v + ++ g+kkt + k + + + +W+m+ey+l PGSC0003DMP400014381 97 KPVGA---KKFGIKKTYNYEenkKDGKDEVNDVSWIMKEYSL 135 ***87...78*********933222334556899******98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.62E-20 | 9 | 142 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 21.271 | 13 | 172 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.0E-14 | 16 | 135 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 359 aa Download sequence Send to blast |
MRITRINHDS PDSELGVRFL PTDEQLISYL IKFVASNHFI CNNIQFEDLY GSKKPWELME 60 AGTKYFFTQL KKLEPNHKRF IRTLVGGGSW KGQDKGKPVG AKKFGIKKTY NYEENKKDGK 120 DEVNDVSWIM KEYSLDDKGP NASGYGDQLP QQLVKPLQNI ESGYVGCDDE KMNDITTQPQ 180 WPNESAYGDQ PQQMVNPIQN IESGYVGCDD EKMNDITTQP QWPNESAYGD QPQQMVNPIQ 240 NIESGYVGYD DELMNNMTTQ PQWLDDYQLS KLIVTCPMVQ GSSATMNEGN INAEFVVPEQ 300 SSTYHEEQVQ NVEETADYQV DPTFTGVLNN DECLLIDELG DFDDFMGENQ VWLSELVS* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | PGSC0003DMP400014381 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010312399.1 | 1e-125 | NAC domain-containing protein 105 | ||||
TrEMBL | M1AEN1 | 0.0 | M1AEN1_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400021118 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA14213 | 4 | 8 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G01720.1 | 4e-12 | NAC family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | PGSC0003DMP400014381 |
Publications ? help Back to Top | |||
---|---|---|---|
|