PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400014380 | ||||||||
Common Name | LOC107061321 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | NAC | ||||||||
Protein Properties | Length: 234aa MW: 26628.9 Da PI: 6.7875 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 60.9 | 4.2e-19 | 12 | 134 | 3 | 128 |
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykv.ePwdLpkkvkaeekewyfFskrdkkyatgkrknr.atksgyWkatgkd 89 G+rF+Ptd++l+ +yL k v++++ + + i+ d+y + +Pw L +++++ yfF++ +k ++ +r r + g Wk + k PGSC0003DMP400014380 12 LGVRFRPTDDQLI-RYLIKFVASNNYVC-NDIPFGDLYGSkKPWVLL---EGSSDTKYFFTQLKKLKSDHTRFIRtLVGGGSWKGKAKG 95 69***********.9**********999.6699999997759****5...4556788******************778899******** PP NAM 90 kevlskkgelvglkktLvfykgra...pkgektdWvmheyrl 128 k+v + ++vg+k++ + ++++ + + +W+m+ey+l PGSC0003DMP400014380 96 KPVGA---KKVGIKRSYNYEENKKdgeDEVNDVSWIMKEYSL 134 ***87...78*********954331114456899******98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.66E-20 | 6 | 161 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 23.251 | 10 | 161 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.4E-15 | 13 | 134 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence Send to blast |
MSITHDSPVS ELGVRFRPTD DQLIRYLIKF VASNNYVCND IPFGDLYGSK KPWVLLEGSS 60 DTKYFFTQLK KLKSDHTRFI RTLVGGGSWK GKAKGKPVGA KKVGIKRSYN YEENKKDGED 120 EVNDVSWIMK EYSLDDKVIK LLRNRGIMKH EDVVLCYIRC KVKESGNHMP TTTANENDDD 180 TQPQGPICTG ELVNHMPTTT SRRNDDDDDI QPQGPNEYAY GDQLPQHMDY ERV* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400014380 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015165872.1 | 1e-175 | PREDICTED: NAC domain-containing protein 2-like | ||||
TrEMBL | M1AEN0 | 1e-174 | M1AEN0_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400021116 | 1e-175 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA14213 | 4 | 8 |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400014380 |
Entrez Gene | 107061321 |
Publications ? help Back to Top | |||
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