PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400014343
Common NameLOC102582309
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 381aa    MW: 41565.5 Da    PI: 9.3419
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400014343genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.31.2e-12313358655
                           HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           +++Er RR ri +++ +L+el+P+     +k  + a++L +AveYIk Lq
  PGSC0003DMP400014343 313 SIAERVRRTRISERMRKLQELVPNM----DKQTNTADMLDLAVEYIKGLQ 358
                           689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.894307357IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.31E-15310371IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.37E-11311360No hitNo description
Gene3DG3DSA:4.10.280.106.0E-14312368IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.1E-12313363IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-9313358IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048573Biological Processphotoperiodism, flowering
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MDSSEFEKNQ NNSGLLRFRS APSSFLENFI DGVGNKGDMG TENKGLSSKF NLDGLNNQLV  60
SQNSLDSKVF ANLSSNSQLP PQYPRQNSTA HMVGSMEGGG GYRVMGSLLG SSNNHHQGQN  120
KLASNLMRQN SSPAGLFSQL NSLNGYATLK GGAGGYRMAN GANGNSTPSS SRLKGHFGFS  180
SVTPPSLGML SRISEVDNES SIATSLDDDE KRGNGNSEPQ LYNMGFPFNS WSDPSQFQQT  240
LTGHKRELDS EGNKLFANAQ IEELGNRPPI LSHHLSLPKT PADIAAMEKL LHFQDTIPCK  300
IRAKRGCATH PRSIAERVRR TRISERMRKL QELVPNMDKQ TNTADMLDLA VEYIKGLQKQ  360
YKVLTDCRAN CKCSAMQKPD *
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00308DAPTransfer from AT2G42280Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400014343
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754490.0HG975449.1 Solanum pennellii chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006351215.20.0PREDICTED: transcription factor bHLH130-like
TrEMBLM1AEJ40.0M1AEJ4_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000210620.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA51942437
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.12e-93bHLH family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]