PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400014332
Common NameLOC107061322
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family NAC
Protein Properties Length: 302aa    MW: 34214.1 Da    PI: 4.4653
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400014332genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM639e-20121343128
                   NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykv.ePwdLpkkvkaeekewyfFskrdkkyatgkrknr.atksgyWkatgkd 89 
                            G+rF+Ptd++l+ +yL k v++++  + + i+  d+y + +Pw+L    + +++  yfF++ +k ++  +r  r  +  g Wk + k 
  PGSC0003DMP400014332  12 LGVRFRPTDDQLI-RYLIKFVSSNNYVC-NDIQFEDLYGSkKPWELL---EDSSDTKYFFTQLKKLEPYHTRFIRtLVGGGSWKGKAKG 95 
                           69***********.9**********999.669999*997759****6...4455688******************778899******** PP

                   NAM  90 kevlskkgelvglkktLvfykgra...pkgektdWvmheyrl 128
                           k+v +   ++vg+k++  + ++++    + +  +W+m+ey+l
  PGSC0003DMP400014332  96 KPVGA---KKVGIKRSYNYEENKKdgeDEVNDVSWIMKEYSL 134
                           ***87...78*********954331114456899******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.92E-207156IPR003441NAC domain
PROSITE profilePS5100523.75610156IPR003441NAC domain
PfamPF023653.0E-1413134IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MSITHDIPVS ELGVRFRPTD DQLIRYLIKF VSSNNYVCND IQFEDLYGSK KPWELLEDSS  60
DTKYFFTQLK KLEPYHTRFI RTLVGGGSWK GKAKGKPVGA KKVGIKRSYN YEENKKDGED  120
EVNDVSWIMK EYSLDDKVIK LLIKYEDVVL CYIRCKVKES GNHMPTTTAS ENDDDTQPQG  180
PICTDESGNH MPTTTPRGND DDDDIQPQGP NEYGYGDQLP QQMAKPLQNI ESGYVGCDDE  240
KMNDMTTQPQ WPNYNSIQSL LLGDYHDPTT LTNEMMNITA TQYTSVDEFL NSGQSFSSLL  300
G*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400014332
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754491e-148HG975449.1 Solanum pennellii chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015165873.10.0PREDICTED: NAC domain-containing protein 41-like
TrEMBLM1AEI30.0M1AEI3_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000210500.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1421348
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]