PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400014291 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | MYB_related | ||||||||
Protein Properties | Length: 200aa MW: 22246.6 Da PI: 4.9194 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 23 | 1.9e-07 | 14 | 46 | 1 | 32 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmg 32 rg+W++eEd +l+d ++++G+ +W + +++ g PGSC0003DMP400014291 14 RGPWSPEEDAKLKDFIHKFGTAgNWIALPQKAG 46 89******************9899988888776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 8.22E-6 | 9 | 44 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 6.644 | 9 | 44 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 7.2E-9 | 12 | 46 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 9.0E-6 | 14 | 45 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.81E-4 | 16 | 40 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 200 aa Download sequence Send to blast |
MGRAPCCDKA NVKRGPWSPE EDAKLKDFIH KFGTAGNWIA LPQKAGQEQP IIIPSAQQNI 60 MYTNNNNNLM MIANNLQNYP NFGATNYNLQ NYPNFGEVAS CSSSDGSYCS QMSFGTNKDI 120 ISIKREEIMS FGHHDGAIYE EINNQQFNFG YFGNTMQEIA TSCCTNGNSG STTHSSNNLL 180 LYNNDENCNK SNEMGMFYY* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400014291 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975450 | 0.0 | HG975450.1 Solanum pennellii chromosome ch11, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006340126.1 | 1e-102 | PREDICTED: transcription factor RAX2-like | ||||
TrEMBL | M1AEE3 | 1e-146 | M1AEE3_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400020979 | 1e-147 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G36890.1 | 2e-24 | MYB family protein |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400014291 |
Publications ? help Back to Top | |||
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