PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400014218
Common NameLOC102586871
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ARF
Protein Properties Length: 700aa    MW: 77252.5 Da    PI: 8.0713
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400014218genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B379.34e-25113214199
                           EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS
                    B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 
                           f k+lt+sd+++ g +++p+ +ae++         ++ +  t+t +d +g++W++++iyr++++r++lt+GW++Fv++++L +gD++vF
  PGSC0003DMP400014218 113 FAKTLTQSDANNGGGFSVPRYCAETIfprldytADPPVQ--TVTAKDVHGETWKFRHIYRGTPRRHLLTTGWSSFVNQKKLVAGDSIVF 199
                           89****************************997656555..8*********************************************** PP

                           EE-SSSEE..EEEEE-S CS
                    B3  83 kldgrsefelvvkvfrk 99 
                              + +++el+v+++r+
  PGSC0003DMP400014218 200 L--RGENGELYVGIRRA 214
                           *..449999******97 PP
2Auxin_resp115.54.8e-38273356183
            Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                           aa  a+++++FevvY+Pra t+eF+v++++v++a++++++ GmRfkmafetedss++++ +Gt+++++ +dp+rWpnS+Wr+L+
  PGSC0003DMP400014218 273 AAYLAASGQPFEVVYYPRANTPEFCVRASSVNTAMRTQWCSGMRFKMAFETEDSSRISWfMGTISSIQLADPIRWPNSPWRLLQ 356
                           577899****************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.109.6E-39104219IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.83E-29108214IPR015300DNA-binding pseudobarrel domain
CDDcd100171.29E-23112213No hitNo description
PROSITE profilePS5086313.521113215IPR003340B3 DNA binding domain
PfamPF023623.1E-23113214IPR003340B3 DNA binding domain
SMARTSM010192.7E-24113215IPR003340B3 DNA binding domain
PfamPF065072.3E-33273356IPR010525Auxin response factor
PROSITE profilePS5174518.671588668IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007389Biological Processpattern specification process
GO:0009734Biological Processauxin-activated signaling pathway
GO:0009738Biological Processabscisic acid-activated signaling pathway
GO:0009743Biological Processresponse to carbohydrate
GO:0010154Biological Processfruit development
GO:0031540Biological Processregulation of anthocyanin biosynthetic process
GO:0048366Biological Processleaf development
GO:0048441Biological Processpetal development
GO:0048442Biological Processsepal development
GO:0048589Biological Processdevelopmental growth
GO:0048829Biological Processroot cap development
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 700 aa     Download sequence    Send to blast
MKEVLEKCVD SQLWHACAGG MVQIPPVNSK VYYFPQGHAE HTLMNVDFSA LPRSPALILC  60
RVAAVKFLAD PETDEVYAKI RVVPVGNKGN DFDDDDDILG SNESGTTEKP NSFAKTLTQS  120
DANNGGGFSV PRYCAETIFP RLDYTADPPV QTVTAKDVHG ETWKFRHIYR GTPRRHLLTT  180
GWSSFVNQKK LVAGDSIVFL RGENGELYVG IRRAKRGGIG GPEAPSGWNS GAGNYGGFSA  240
FLREEMSKNG NLSSPTGSLR GKVRVRPESV VEAAYLAASG QPFEVVYYPR ANTPEFCVRA  300
SSVNTAMRTQ WCSGMRFKMA FETEDSSRIS WFMGTISSIQ LADPIRWPNS PWRLLQVAWD  360
EPDLLQNVKH VSPWLVELVS NMPVIHHSPF SPPRKKLRLP PDFSLDSQFQ LPFFSGNPLR  420
SSSPFCCLSD NITAGIQGAR HAQFGVPLLD LHLSNNLPSG LLPPSFQRVA ANSQLPNVIN  480
KYQNDRNDNI SCLLTMGTSS KTLEKNDSVN TPRFLLFGQP ILTEQQISNG CSVTAPQVVQ  540
TGKDLGRIQL INEKHPPEQK GSIQDNLTSA TFFWNRGYHA AELGVLDTGH CKVFLESEDV  600
GRTLDLSVMG SYEELYRRLA KMFGLERPDM LTRVLYHDAT GAVKHTGDEP FSDFVKSAKR  660
LTILMNSSSN IKRKWITGLA TAERGLDSSN QAGPLSIFA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-82937751388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400014218
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJF9117880.0JF911788.1 Solanum lycopersicum cultivar MP1 auxin response factor 10 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006340187.10.0PREDICTED: auxin response factor 18 isoform X1
RefseqXP_006340188.10.0PREDICTED: auxin response factor 18 isoform X1
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLM1AE840.0M1AE84_SOLTU; Auxin response factor
STRINGPGSC0003DMT4000208740.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59224115
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28350.10.0auxin response factor 10
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]
  3. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]