PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400014159
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB_related
Protein Properties Length: 541aa    MW: 61233.9 Da    PI: 5.2381
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400014159genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.63.9e-10448496348
                           SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
       Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                            W+t E ++lv++v ++G g+W+ I r++     +R++ ++k++w+++l
  PGSC0003DMP400014159 448 YWSTTEVLKLVEGVSKYGVGRWSDIKRMFFqssVHRSPADLKDKWRNLL 496
                           6****************************99****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.265440500IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.3E-12441501IPR009057Homeodomain-like
SuperFamilySSF466894.64E-15443498IPR009057Homeodomain-like
SMARTSM007173.0E-10445498IPR001005SANT/Myb domain
CDDcd116602.51E-17447497No hitNo description
PfamPF002495.5E-8448496IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 541 aa     Download sequence    Send to blast
MQTSMDSFEY NWKTPNESAK SSQREPEQVV SAASIYFASE EEAIGVEQLF AEPEYGDIVD  60
TLLDFNTCAF SLPESYIKEF SASESVVTNS DRDAVQRGLS EENKTREKFL DGLSNGYNDN  120
HCSISCEDYL LDIELEEETP TLDDVTRDVS CIGNVNLENK LADSEQRNCG VHVLKLSDAS  180
TSSDHDALDE FEDMSTDKLL EVFRNMFGHQ TSVADKQWLE SHMIFGLENQ EMSGKNYSFP  240
KSSFDSSENQ GVKVPPACQN LLTVSTAFAS IFNFRTKPRV QHVKRREHIQ WNSFKCLSSA  300
AGEIQLDFPD KWDSKELAKE NVKCDGTKLG ISEQNLKCKP SRGGFGRRYY HRGAKASSQD  360
LGKRNFQVGC IQIPPGLPIE ERFIRREGHL SKDCRANRAY NGNIHSAEAQ DDPSGTLSDQ  420
SSDNSSEEDW TIGSETRGTN QDRKHNKYWS TTEVLKLVEG VSKYGVGRWS DIKRMFFQSS  480
VHRSPADLKD KWRNLLRASC RRLQSRRGVF YSSYQLKTSN LSLFVLNLIQ NSFSFMFLCT  540
*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400014159
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754500.0HG975450.1 Solanum pennellii chromosome ch11, complete genome.
GenBankHG9755230.0HG975523.1 Solanum lycopersicum chromosome ch11, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006340203.10.0PREDICTED: uncharacterized protein LOC102591958 isoform X1
TrEMBLM1AE290.0M1AE29_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000207900.0(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.24e-18TRF-like 6
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]