PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400013991
Common NameLOC102591818
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 315aa    MW: 34098.6 Da    PI: 5.1949
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400013991genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH50.73.1e-16138184455
                           HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                            hn  E+rRR++iN+++  L+ l+P++      K +Ka++L +A+eY+k+Lq
  PGSC0003DMP400013991 138 VHNLSEKRRRSKINEKLKALQNLIPNS-----NKTDKASMLDEAIEYLKQLQ 184
                           6*************************7.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000834.62E-18128188No hitNo description
SuperFamilySSF474594.97E-20131193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-19131191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.854134183IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.9E-14138184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.5E-18140189IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MADPYRTNPH AASSLESEDM SSFFLNFLQG TSASASATAA AGFYNRSVPV PVAESSSSLN  60
FSDPGRFYAA EFKEGVENVF ASAGLGDCDG MNSANRREFL EDDKVDNFGF SSEECDGLDM  120
PSDPTHPRSS KRSRSAEVHN LSEKRRRSKI NEKLKALQNL IPNSNKTDKA SMLDEAIEYL  180
KQLQLQVQML TLRNGLSLYP GYVPGSLQSV QLPSGNEFDG RSFMLSANGG ATLPVNREMP  240
QTAFEISNQN PSGKPTITSH NTENAVALET TIQNHYGVLN HLASSKDMCR DNTLSRLHID  300
MSCSGNNSSS GVSS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400013991
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754431e-176HG975443.1 Solanum pennellii chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006354865.10.0PREDICTED: transcription factor SPATULA-like
TrEMBLM1ADN40.0M1ADN4_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000205340.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA75432328
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36930.13e-37bHLH family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]