PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PGSC0003DMP400013990 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 291aa MW: 31571 Da PI: 5.177 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 50.9 | 2.7e-16 | 138 | 184 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn E+rRR++iN+++ L+ l+P++ K +Ka++L +A+eY+k+Lq PGSC0003DMP400013990 138 VHNLSEKRRRSKINEKLKALQNLIPNS-----NKTDKASMLDEAIEYLKQLQ 184 6*************************7.....5******************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 1.53E-18 | 128 | 188 | No hit | No description |
SuperFamily | SSF47459 | 4.32E-20 | 131 | 193 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.1E-19 | 131 | 191 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 17.854 | 134 | 183 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 7.9E-14 | 138 | 184 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 5.5E-18 | 140 | 189 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 291 aa Download sequence Send to blast |
MADPYRTNPH AASSLESEDM SSFFLNFLQG TSASASATAA AGFYNRSVPV PVAESSSSLN 60 FSDPGRFYAA EFKEGVENVF ASAGLGDCDG MNSANRREFL EDDKVDNFGF SSEECDGLDM 120 PSDPTHPRSS KRSRSAEVHN LSEKRRRSKI NEKLKALQNL IPNSNKTDKA SMLDEAIEYL 180 KQLQLQVQML TLRNGLSLYP GYVPGSLQSV QLPSGNEFDG RSFMLSANGG ATLPVNREMP 240 QTAFEISNQN PSGKPTITSH NTENAVALET TIQNHYGVLN HLASSKVICL * |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | PGSC0003DMP400013990 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | HG975443 | 1e-176 | HG975443.1 Solanum pennellii chromosome ch04, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006354865.1 | 0.0 | PREDICTED: transcription factor SPATULA-like | ||||
TrEMBL | M1ADN3 | 0.0 | M1ADN3_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400020534 | 0.0 | (Solanum tuberosum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G36930.1 | 1e-36 | bHLH family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | PGSC0003DMP400013990 |
Publications ? help Back to Top | |||
---|---|---|---|
|