PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400013982
Common NameLOC102589042
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ERF
Protein Properties Length: 146aa    MW: 16663.7 Da    PI: 9.4094
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400013982genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.94.5e-171766255
                   AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                           y+G+r +k +g+WvAeIr+p   +kr r++lg++ ++  Aa+a++ a  +l+g
  PGSC0003DMP400013982 17 PYRGIRMRK-WGKWVAEIREP---NKRSRIWLGSYSSPVAAARAYDTAVFYLRG 66
                          69*****99.**********9...336*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.05E-201775IPR016177DNA-binding domain
PROSITE profilePS5103221.9971774IPR001471AP2/ERF domain
SMARTSM003802.7E-361780IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-291875IPR001471AP2/ERF domain
PfamPF008471.3E-101866IPR001471AP2/ERF domain
PRINTSPR003678.2E-121829IPR001471AP2/ERF domain
CDDcd000181.13E-271875No hitNo description
PRINTSPR003678.2E-125676IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009414Biological Processresponse to water deprivation
GO:0042538Biological Processhyperosmotic salinity response
GO:0005634Cellular Componentnucleus
GO:0001078Molecular Functiontranscriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 146 aa     Download sequence    Send to blast
MMEGEKRKQR EHQQDKPYRG IRMRKWGKWV AEIREPNKRS RIWLGSYSSP VAAARAYDTA  60
VFYLRGPSAR LNFPEFIVDD HENHDLSAAS IRKKATEVGA RVDALQTAIH NSTAIPPESN  120
SKSTRMMMKP DLNEYPTPES CDEDN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-151474263ATERF1
3gcc_A4e-151474263ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00595DAPTransfer from AT5G67190Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400013982
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN1258580.0JN125858.1 Solanum tuberosum dehydration-responsive element-binding protein DREB2 (DREB2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006354856.11e-106PREDICTED: ethylene-responsive transcription factor ERF010-like
SwissprotQ9FH946e-52ERF10_ARATH; Ethylene-responsive transcription factor ERF010
TrEMBLM1ADM51e-105M1ADM5_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000205251e-106(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9432390
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67190.13e-54DREB and EAR motif protein 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]
  3. Bouaziz D, et al.
    Ectopic expression of dehydration responsive element binding proteins (StDREB2) confers higher tolerance to salt stress in potato.
    Plant Physiol. Biochem., 2012. 60: p. 98-108
    [PMID:22922109]
  4. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]