PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400013759 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | Trihelix | ||||||||
Protein Properties | Length: 384aa MW: 42529.7 Da PI: 8.7478 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 48.5 | 2.3e-15 | 99 | 189 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdq 84 +W++ +++Liea + +l+rg+l++++W+ev++++ ++++ r+ +qCk++++ l+k+yk +k++ ++ +s+ ++p+f++ PGSC0003DMP400013759 99 CWSEAATHTLIEAWGSHYVELKRGNLRQKHWQEVANAVnalhgHSKKQFRTDIQCKNRIDTLKKKYKIEKARVSQSHSRYIPQWPFFNS 187 7*************************************999987778889************************999***********9 PP trihelix 85 le 86 l+ PGSC0003DMP400013759 188 LD 189 97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 5.5E-25 | 97 | 190 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 384 aa Download sequence Send to blast |
MYRRPNHTDY FSPSSLFSSS NPNSSTAVQQ SNSAVAASPS SPMSDDDLVA SPSSNNNSPS 60 PSPSPPPYSV KNELATLPPP PMIPPASTRP AAFPAREDCW SEAATHTLIE AWGSHYVELK 120 RGNLRQKHWQ EVANAVNALH GHSKKQFRTD IQCKNRIDTL KKKYKIEKAR VSQSHSRYIP 180 QWPFFNSLDV LIGDNFKPSP LPVTVAPRRK TPPLLPPPPS AVPVGPRSKR PAAVMEDAVS 240 RRNFSAMAAA AAAAASEDSD EEEESETSSP ATFTAGALSR RKESGALAEG CSRLAEAIGK 300 FAEIYERVED AKQRQMVELE KQRMQFAKDL EIQRMKLIME SQVQLEKLKR AKNSSQAETL 360 DEVDNHKEHI YDQEWRMGAS HWM* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00413 | DAP | Transfer from AT3G58630 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400013759 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975451 | 0.0 | HG975451.1 Solanum pennellii chromosome ch12, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006350027.1 | 0.0 | PREDICTED: trihelix transcription factor ASIL1-like | ||||
TrEMBL | M1AD25 | 0.0 | M1AD25_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400020194 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1318 | 23 | 70 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G58630.1 | 5e-44 | sequence-specific DNA binding transcription factors |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400013759 |
Publications ? help Back to Top | |||
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