PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400013650 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 771aa MW: 85190.9 Da PI: 5.9206 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 62.8 | 5.2e-20 | 123 | 178 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 r++ +++t++q+++Le lF+++++p++++r eL+++l L++rqVk+WFqNrR+++k PGSC0003DMP400013650 123 RKRYHRHTPQQIQQLELLFKECPHPDEKQRMELSRRLCLETRQVKFWFQNRRTQMK 178 789999***********************************************999 PP | |||||||
2 | START | 199.3 | 1.6e-62 | 312 | 539 | 1 | 206 |
HHHHHHHHHHHHHHHHC-TT-EEEE.....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S.. CS START 1 elaeeaaqelvkkalaeepgWvkss.....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla.. 77 ela++a++el+k+a+ ++p+W + + e +n de+++kf++ + + +e +r++g+v+ ++ lve+l+d++ +W e+++ PGSC0003DMP400013650 312 ELALAAMDELIKMAKTDDPLWLRNRelcggEVLNHDEYMRKFTPCIGlkpikFVSEGSRETGMVIINSLALVETLMDSN-KWAEMFPcl 399 5899****************************************999****99**************************.********* PP ..EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--...-TTSEE-EESSEEEEEE CS START 78 ..kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe..sssvvRaellpSgilie 155 + +t++vissg galqlm +elq+lsplvp R+f f+R+++q+ +g+w++vdvSvd ++ ++ + +++lpSg++++ PGSC0003DMP400013650 400 iaSTSTIDVISSGvggtrnGALQLMRSELQVLSPLVPiREFKFLRFCKQHAEGVWAVVDVSVDTIRETTTldATTFSNCRRLPSGCVVQ 488 *******************************************************************99999999************** PP EECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 156 pksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206 +++ng+sk+twvehv+++++++h+l+r+l++ g+ +ga++wvatlqrqce+ PGSC0003DMP400013650 489 DMPNGYSKITWVEHVEYDESVVHQLYRPLISAGMGFGAQKWVATLQRQCEC 539 *************************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.8E-21 | 108 | 174 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 5.13E-20 | 110 | 180 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.443 | 120 | 180 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.6E-15 | 121 | 184 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.51E-17 | 122 | 180 | No hit | No description |
Pfam | PF00046 | 1.8E-17 | 123 | 178 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 155 | 178 | IPR017970 | Homeobox, conserved site |
PROSITE profile | PS50848 | 44.206 | 303 | 542 | IPR002913 | START domain |
SuperFamily | SSF55961 | 6.69E-31 | 306 | 539 | No hit | No description |
CDD | cd08875 | 1.00E-117 | 307 | 538 | No hit | No description |
SMART | SM00234 | 1.2E-47 | 312 | 539 | IPR002913 | START domain |
Pfam | PF01852 | 1.3E-54 | 312 | 539 | IPR002913 | START domain |
SuperFamily | SSF55961 | 1.65E-20 | 559 | 762 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 771 aa Download sequence Send to blast |
MNFGDFLDNS IIGDGNGGGA RIVTNSNNMR SNNNMSISTN LPSLAKSMFN SPRLSLALQT 60 GREGGPGGVA VMAEENYYEA NDNNNNIIGR RSIEKEQAES RSGSENLEGA SGDDEDDKPQ 120 RKRKRYHRHT PQQIQQLELL FKECPHPDEK QRMELSRRLC LETRQVKFWF QNRRTQMKTQ 180 LERHENSFLR QENDKLRAEN MSIREAIMNP ICTTCSGPAI IGEVSFEEQH LRIENSRLKD 240 ELDRVNALAG KFIGRPISLP LPNSTLELEV GNNGFRAKPD FGVGISNPLP VLPHTRQTTG 300 IEMSFDRSVY LELALAAMDE LIKMAKTDDP LWLRNRELCG GEVLNHDEYM RKFTPCIGLK 360 PIKFVSEGSR ETGMVIINSL ALVETLMDSN KWAEMFPCLI ASTSTIDVIS SGVGGTRNGA 420 LQLMRSELQV LSPLVPIREF KFLRFCKQHA EGVWAVVDVS VDTIRETTTL DATTFSNCRR 480 LPSGCVVQDM PNGYSKITWV EHVEYDESVV HQLYRPLISA GMGFGAQKWV ATLQRQCECL 540 AILMSSTVPS RDHTGNNVED YVRVLTRKSV DDPGEPPGIV VNAATSVWLP VSPQRLFEFL 600 RDEQLRSEWD ILSNGGPMQE MAHIAKGQDH GNCVSLLRAS VMNASQNMLI LQETCTDASG 660 SLVVYAPVDI PSMHLVMNGG DSAYVALLPS GFSIVPDGPG SRGPNLVKSL NNGPGPGPDM 720 RVSGSLLTVA FQILVNSLPT AKLTVESVET VNNLISCTLQ KIKGALHCES * |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 116 | 122 | DKPQRKR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in the regulation of the tissue-specific accumulation of anthocyanins and in cellular organization of the primary root. {ECO:0000269|PubMed:10402424}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400013650 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006366174.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein ANTHOCYANINLESS 2-like | ||||
Swissprot | Q0WV12 | 0.0 | ANL2_ARATH; Homeobox-leucine zipper protein ANTHOCYANINLESS 2 | ||||
TrEMBL | M1ACV4 | 0.0 | M1ACV4_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400019986 | 0.0 | (Solanum tuberosum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00730.1 | 0.0 | HD-ZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400013650 |
Publications ? help Back to Top | |||
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