PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400013097
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family G2-like
Protein Properties Length: 161aa    MW: 17391.5 Da    PI: 8.2358
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400013097genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like109.71.5e-3446100155
               G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                           k+rlrWt+eLHerFv+av+qLGG+++AtPk +l++m+v+gLt++hvkSHLQkYRl
  PGSC0003DMP400013097  46 KQRLRWTNELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRL 100
                           79****************************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.33743103IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.5E-3345101IPR009057Homeodomain-like
SuperFamilySSF466891.04E-1845101IPR009057Homeodomain-like
TIGRFAMsTIGR015578.8E-2746101IPR006447Myb domain, plants
PfamPF002494.0E-104899IPR001005SANT/Myb domain
PfamPF143792.2E-9132154IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 161 aa     Download sequence    Send to blast
MYQPKGVPSS SLAHSNAAVD SQSLDCGGGS MDPTGGGNNN SSLASKQRLR WTNELHERFV  60
DAVAQLGGPD RATPKGVLRV MGVQGLTIYH VKSHLQKYRL AKYLPDSSSD GKNSDKKEPR  120
DMLSSLDGSS GVEITTALKL QMEVQKRLHE QLEVCSFNDF *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A3e-2646103259Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B3e-2646103259Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A2e-2646103158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B2e-2646103158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C2e-2646103158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D2e-2646103158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A3e-2646103259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C3e-2646103259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D3e-2646103259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F3e-2646103259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H3e-2646103259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J3e-2646103259Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400013097
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754501e-100HG975450.1 Solanum pennellii chromosome ch11, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006349121.11e-109PREDICTED: myb family transcription factor APL-like
RefseqXP_006349122.11e-109PREDICTED: myb family transcription factor APL-like
RefseqXP_015164958.11e-109PREDICTED: myb family transcription factor APL-like
SwissprotQ9SJW03e-69PHL7_ARATH; Myb family transcription factor PHL7
TrEMBLM1ABL31e-115M1ABL3_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000190991e-108(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01060.13e-63G2-like family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]