PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400012972
Common NameLOC102588981
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB
Protein Properties Length: 321aa    MW: 36426 Da    PI: 6.8737
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400012972genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.21.6e-171360148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                          rg W++eEde+l++ ++ +G+ +W+++++  g+ R++k+c++rw +yl
  PGSC0003DMP400012972 13 RGLWSPEEDEKLIKHINTHGNSCWSSVPKLAGLQRCGKSCRLRWINYL 60
                          788*******************************************97 PP
2Myb_DNA-binding51.52.4e-1666109146
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                           rg ++++E+ +++d+++ lG++ W+ Ia++++ gRt++++k++w++
  PGSC0003DMP400012972  66 RGCFSEQEERIIIDVHRILGNR-WAQIAKHLP-GRTDNEVKNFWNS 109
                           899*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.5E-25463IPR009057Homeodomain-like
PROSITE profilePS5129417.117860IPR017930Myb domain
SuperFamilySSF466896.13E-2810107IPR009057Homeodomain-like
SMARTSM007172.6E-131262IPR001005SANT/Myb domain
PfamPF002493.5E-161360IPR001005SANT/Myb domain
CDDcd001674.67E-111660No hitNo description
PROSITE profilePS5129426.12561115IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.6E-2464116IPR009057Homeodomain-like
SMARTSM007171.7E-1565113IPR001005SANT/Myb domain
PfamPF002498.0E-1566109IPR001005SANT/Myb domain
CDDcd001673.71E-1169108No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MGHHCCSKQK VKRGLWSPEE DEKLIKHINT HGNSCWSSVP KLAGLQRCGK SCRLRWINYL  60
RPDLKRGCFS EQEERIIIDV HRILGNRWAQ IAKHLPGRTD NEVKNFWNSC IKKKLISQGF  120
DPNTHNLLST KKKANNNYTT SSIFTIETSL SSSSTKELVS MDLIKASLAA LSTFPNYTNM  180
PQCQTSLSRL YGSVCVPTTT NIIGNSNFAS TIDYKKQSTI INENCMWSIT GFETPHHEFG  240
NGHEEMKQEG QVQVEEKNCQ EEVLYKVNDL HEFNNDGPRI AENVTFDEGS DFDFEFMDSE  300
LVPCGIFTNI NSIDQLAWNC *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-31131157108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00350DAPTransfer from AT3G12720Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400012972
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754410.0HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006363156.10.0PREDICTED: transcription factor MYB86-like
SwissprotQ8LPH61e-68MYB86_ARATH; Transcription factor MYB86
TrEMBLM1ABB60.0M1ABB6_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000188970.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12720.11e-82myb domain protein 67
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]