PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400012935
Common NameLOC102604216
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB
Protein Properties Length: 304aa    MW: 35039.9 Da    PI: 4.4653
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400012935genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.87.9e-161461148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                          rgrWT eEde++ ++++  G g+W++ ++  g+ R++k+c++rw +yl
  PGSC0003DMP400012935 14 RGRWTSEEDEIITNYIQANGEGSWRSLPKNAGLLRCGKSCRLRWINYL 61
                          8*******************************99************97 PP
2Myb_DNA-binding445.1e-1467112148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                           rg+ T +E+ +++++ + lG++ W++I ++++ gRt++++k++w+++l
  PGSC0003DMP400012935  67 RGNITSDEEAIIIKLRATLGNR-WSLIVEHLP-GRTDNEIKNYWNSHL 112
                           7999******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.5E-21564IPR009057Homeodomain-like
PROSITE profilePS5129414.828961IPR017930Myb domain
SuperFamilySSF466893.26E-2611108IPR009057Homeodomain-like
SMARTSM007174.6E-111363IPR001005SANT/Myb domain
PfamPF002492.2E-131461IPR001005SANT/Myb domain
CDDcd001677.79E-71661No hitNo description
PROSITE profilePS5129422.15962116IPR017930Myb domain
Gene3DG3DSA:1.10.10.609.0E-2365116IPR009057Homeodomain-like
SMARTSM007172.0E-1466114IPR001005SANT/Myb domain
PfamPF002492.7E-1267112IPR001005SANT/Myb domain
CDDcd001679.96E-971112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MGRTPCCEKV GLKRGRWTSE EDEIITNYIQ ANGEGSWRSL PKNAGLLRCG KSCRLRWINY  60
LKTDLKRGNI TSDEEAIIIK LRATLGNRWS LIVEHLPGRT DNEIKNYWNS HLSRKVDSLR  120
IPSDEKLPQA VVELAKKGTQ QHISKRGRRR KINTSVSNST NEITVNNDIE FDRTDDKMLW  180
DDDIMLMDDK YGELDQDFIT NCLWDGEGEN LEIANDDNNN NNNNNEILSE DNYGKLDCWD  240
WEYLGEVLNN EIWTNSTKEA EQENNNNMSL CDINDNMQNC MNKEATPENI DPMQSDLVTW  300
LLS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A8e-23121185110B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00627PBMTransfer from PK06182.1Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400012935
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755181e-166HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006355861.10.0PREDICTED: transcription repressor MYB6-like
TrEMBLM1AB810.0M1AB81_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000188410.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49330.12e-70myb domain protein 111
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]