PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PGSC0003DMP400012636

Organism

Solanum tuberosum

Taxonomic ID

4113

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

NAC

Protein Properties

Length: 117aa MW: 13588.4 Da PI: 10.5419

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PGSC0003DMP400012636	genome	PGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	112	6.6e-35	21	95	53	128
NAM 53 aeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +++ ewyfFs+rd+ky++g+r+nratk+gyWkatgkd++v s ++++vg+kktLv+y+grap+g +tdWvmheyrl PGSC0003DMP400012636 21 SKDLEWYFFSPRDRKYPNGSRTNRATKAGYWKATGKDRKVNS-QTRAVGMKKTLVYYRGRAPHGARTDWVMHEYRL 95 4667************************************.9999*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	36.161	1	116	IPR003441	NAC domain
SuperFamily	SSF101941	3.53E-36	20	100	IPR003441	NAC domain
Pfam	PF02365	3.0E-18	20	95	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 117 aa Download sequence Send to blast
MIKREGFRLS SNPKGKSLLP SKDLEWYFFS PRDRKYPNGS RTNRATKAGY WKATGKDRKV 60 NSQTRAVGMK KTLVYYRGRA PHGARTDWVM HEYRLDEREC EVANGLQDAY AKYLTY*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-32	18	97	61	144	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-32	18	97	61	144	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-32	18	97	61	144	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-32	18	97	61	144	NO APICAL MERISTEM PROTEIN
3swm_A	2e-32	18	97	64	147	NAC domain-containing protein 19
3swm_B	2e-32	18	97	64	147	NAC domain-containing protein 19
3swm_C	2e-32	18	97	64	147	NAC domain-containing protein 19
3swm_D	2e-32	18	97	64	147	NAC domain-containing protein 19
3swp_A	2e-32	18	97	64	147	NAC domain-containing protein 19
3swp_B	2e-32	18	97	64	147	NAC domain-containing protein 19
3swp_C	2e-32	18	97	64	147	NAC domain-containing protein 19
3swp_D	2e-32	18	97	64	147	NAC domain-containing protein 19
4dul_A	2e-32	18	97	61	144	NAC domain-containing protein 19
4dul_B	2e-32	18	97	61	144	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor directing sieve element enucleation and cytosol degradation. Not required for formation of lytic vacuoles. Regulates, with NAC086, the transcription of NEN1, NEN2, NEN3, NEN4, RTM1, RTM2, UBP16, PLDZETA, ABCB10 and At1g26450. {ECO:0000269\|PubMed:25081480}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PGSC0003DMP400012636

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Regulated by the transcription factor APL (AC Q9SAK5). {ECO:0000269\|PubMed:25081480}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC226509	1e-148	AC226509.1 Solanum lycopersicum cultivar Heinz 1706 chromosome 2 clone C02HBa0144P17, complete sequence.
GenBank	HG975441	1e-148	HG975441.1 Solanum pennellii chromosome ch02, complete genome.
GenBank	HG975514	1e-148	HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006348211.1	2e-64	PREDICTED: NAC domain-containing protein 86-like
Refseq	XP_010316553.1	3e-64	NAC domain-containing protein 86 isoform X1
Refseq	XP_010316554.1	1e-64	NAC domain-containing protein 71 isoform X2
Refseq	XP_015065777.1	1e-64	NAC domain-containing protein 71-like isoform X2
Swissprot	A4VCM0	2e-52	NAC45_ARATH; NAC domain-containing protein 45
TrEMBL	M1AAH7	3e-81	M1AAH7_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400018364	5e-82	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA30705	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G65910.1	1e-58	NAC domain containing protein 28

Link Out ? help Back to Top
Phytozome	PGSC0003DMP400012636

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Xu X, et al. Genome sequence and analysis of the tuber crop potato. Nature, 2011. 475(7355): p. 189-95 [PMID:21743474]