PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400012561
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family STAT
Protein Properties Length: 760aa    MW: 85504.8 Da    PI: 6.7391
Description STAT family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400012561genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1STAT180.32.7e-562683871120
                  STAT   1 ldvvllnalgqpvekdvevvasLlyadsglvveksddaeapLLisydGvefssedrplkllrGrasfklkisqLsskcdnrLfrikfei 89 
                           +dv+l++ +++p++ + evvasL+y+d+ ++vek+ da+a LL+sydG+e++s+drp+k++ GrasfklkisqLsskcdnrLfri+f+i
  PGSC0003DMP400012561 268 IDVTLMDNFSRPMTEEAEVVASLVYSDDNTPVEKPVDADAALLTSYDGIEYASSDRPSKVISGRASFKLKISQLSSKCDNRLFRIRFDI 356
                           69*************************************************************************************** PP

                  STAT  90 pklkkypfleavskpirCisrsrntrssslt 120
                           pkl kypfle++s+pirCisr+r+tr++sl+
  PGSC0003DMP400012561 357 PKLGKYPFLEVFSRPIRCISRNRSTRATSLM 387
                           **************************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.505.101.6E-5656720IPR000980SH2 domain
SuperFamilySSF555501.71E-7658724IPR000980SH2 domain
PROSITE profilePS500019.737660759IPR000980SH2 domain
Sequence ? help Back to Top
Protein Sequence    Length: 760 aa     Download sequence    Send to blast
MQEHPDVTSH APFLLLDERK KILLFPSLIS SHSNITSWRE VAHAISECEF PTKKWVHVGC  60
EVTQDLLHLY FDGKIVGEKC LTSSPSLSND MGSDNSRISL TCISGKDSQL DGYVHSSELF  120
PILSTIENHY VKDPPVQLSI DSSSAYEIEE DSDGVWSIVG GKAVKACYIT SNPHDSKSLI  180
DIRMSLTTVE YSRSAMVYFD ILPAIKAYFR ISCNTNSSRF SSFVPQKVKS VGFASFLQIF  240
SVDLLIVQTA KSFRNDSSKA SCRRNFDIDV TLMDNFSRPM TEEAEVVASL VYSDDNTPVE  300
KPVDADAALL TSYDGIEYAS SDRPSKVISG RASFKLKISQ LSSKCDNRLF RIRFDIPKLG  360
KYPFLEVFSR PIRCISRNRS TRATSLMLRK SSLGIHLLNR SQSPVLDDGS SDHLCIVREA  420
KQSPSSKRVK LGQEKLCANF KDDFVLKQAN GGSRSHSWTS EDNHAHQNSL VARPVSHGGA  480
ENFSSDSENS ETTNSPIDDL PSNRDPISDM VVFKYCLADL NERRLLLKEM AMTAKEEELA  540
TFAERVSLFS GCSHHRHQIS ISKRLIEEGI NCWNLISNDN HHVLWENLVS GLQEHFLKMT  600
FGRIRSLTHQ DFNLLRRVSG CQDLVSQDNF EKLWCWLYPV AFTLSQQCIS SLWGSTSPMW  660
IEGFITKEEA ESSLKSLGAL QEPGTYILRF PTSRSWPHPD AGNLVVTYVG SDYTIHHRLM  720
SLEFIYSSGV KGTTIRPIQD MLLEQPELRR LGRQDFLLF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400012561
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2103540.0AC210354.1 Solanum lycopersicum cultivar Heinz 1706 chromosome 7 clone C07HBa0102J11, complete sequence.
GenBankHG9755190.0HG975519.1 Solanum lycopersicum chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006348345.10.0PREDICTED: uncharacterized protein LOC102592228
TrEMBLM1AAA90.0M1AAA9_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000182460.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA93942325
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78540.21e-136SH2 domain protein B
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]