PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400012529 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | NAC | ||||||||
Protein Properties | Length: 205aa MW: 24206.7 Da PI: 9.7459 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 89 | 8.5e-28 | 16 | 136 | 3 | 128 |
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 GfrFhPtd el+ +yL + v +k+l++ i++ d+y+ +Pw + +ek +yfF++ +kk+++++r r++ sg Wk++ k k+ PGSC0003DMP400012529 16 EGFRFHPTDRELM-KYLLHYVINKPLPTLVPIDQEDLYSKDPWVFF-D-GRKEKTMYFFTELKKKKKENTRYVRSVGSGSWKSQDKGKA 101 7************.99*********999888**************6.2.3467899********************************* PP NAM 92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 v+s++g+ g k++L + +a++ + +W+m+ey++ PGSC0003DMP400012529 102 VISERGSILGYKRSLRYQW-KASE-HDGQWLMKEYSI 136 ****************983.4444.589*******86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.96E-29 | 12 | 164 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 31.227 | 14 | 164 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.4E-17 | 16 | 136 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 205 aa Download sequence Send to blast |
MAYDERKSSS YSVYTEGFRF HPTDRELMKY LLHYVINKPL PTLVPIDQED LYSKDPWVFF 60 DGRKEKTMYF FTELKKKKKE NTRYVRSVGS GSWKSQDKGK AVISERGSIL GYKRSLRYQW 120 KASEHDGQWL MKEYSISDEV KKQLRKRVRD YNKENYVLCR VKRKKGEDDP IEQKETIETE 180 ELNAIIDDPL NGVLKPIATL NLTL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 5e-17 | 5 | 167 | 6 | 171 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 144 | 164 | RKRVRDYNKENYVLCRVKRKK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400012529 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975446 | 1e-135 | HG975446.1 Solanum pennellii chromosome ch07, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015082573.2 | 1e-114 | NAC domain-containing protein 1-like | ||||
TrEMBL | M1AA79 | 1e-148 | M1AA79_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400018201 | 1e-149 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1024 | 13 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G77450.1 | 9e-22 | NAC domain containing protein 32 |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400012529 |
Publications ? help Back to Top | |||
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