PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400012481
Common NameLOC102597619
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ERF
Protein Properties Length: 179aa    MW: 20095.5 Da    PI: 7.248
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400012481genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.61.6e-182978255
                   AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                           y+GVr+++ +g+Wv+eIr+p++   + r++lg+f ++e Aa+a++ a+ +l+g
  PGSC0003DMP400012481 29 IYRGVRRRR-WGKWVSEIREPKK---KSRIWLGSFISPETAARAYDVAAYCLKG 78
                          69****777.**********854...6************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.4E-112878IPR001471AP2/ERF domain
CDDcd000188.74E-302887No hitNo description
PROSITE profilePS5103223.2612986IPR001471AP2/ERF domain
SMARTSM003806.4E-352992IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.3E-312987IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-212988IPR016177DNA-binding domain
PRINTSPR003677.2E-133041IPR001471AP2/ERF domain
PRINTSPR003677.2E-136888IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
MEQVKSPPSS RAITNCRGGG GGSSTRHPIY RGVRRRRWGK WVSEIREPKK KSRIWLGSFI  60
SPETAARAYD VAAYCLKGSK AELNFPDEIE RLPRPISSGA RDIQAAATMA ANMGIVKGKN  120
DEDRCCSDDF WEEIELPELR DIAGKDYYLS SESDHNYFNS EVWQWNSCGV EFPSDNII*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-191988474Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00120DAPTransfer from AT1G01250Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400012481
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006345621.11e-130PREDICTED: ethylene-responsive transcription factor ERF023
SwissprotQ1ECI21e-49ERF23_ARATH; Ethylene-responsive transcription factor ERF023
TrEMBLM1AA361e-129M1AA36_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000181371e-129(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA138741314
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01250.11e-40ERF family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]