PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400012451 | ||||||||
Common Name | LOC102593983 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | ERF | ||||||||
Protein Properties | Length: 190aa MW: 21856.7 Da PI: 10.8681 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 57.8 | 2.6e-18 | 63 | 113 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrdp + k +r +lg++ t+e+Aa a+++ + kl+g PGSC0003DMP400012451 63 RYRGVRRRP-WGKFAAEIRDP---KrKGARLWLGTYATPEDAALAYDRTAFKLRG 113 8********.**********8...4334*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.76E-30 | 62 | 123 | No hit | No description |
Pfam | PF00847 | 3.8E-13 | 63 | 113 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.4E-34 | 63 | 127 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.026 | 63 | 121 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.37E-22 | 63 | 122 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.9E-30 | 63 | 122 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.6E-12 | 64 | 75 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.6E-12 | 103 | 123 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 190 aa Download sequence Send to blast |
MHQENSTQFD LSILDSPLEH QFNGFNLESI SSDRSINHTW EKIDKNEDNI PQSSSQAPNN 60 WKRYRGVRRR PWGKFAAEIR DPKRKGARLW LGTYATPEDA ALAYDRTAFK LRGTRALLNF 120 PHLIGTNVAE LNRVRPKRRS RSTEIIKEEE IPSPKRRNPQ LINSIAKVNS IIHMFEITSL 180 AFHPQGKSK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 3e-29 | 62 | 121 | 4 | 63 | ATERF1 |
3gcc_A | 3e-29 | 62 | 121 | 4 | 63 | ATERF1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400012451 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975444 | 0.0 | HG975444.1 Solanum pennellii chromosome ch05, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006345610.1 | 1e-138 | PREDICTED: ethylene-responsive transcription factor 13-like | ||||
TrEMBL | M1AA15 | 1e-137 | M1AA15_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400018085 | 1e-137 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G44840.1 | 2e-40 | ethylene-responsive element binding factor 13 |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400012451 |
Entrez Gene | 102593983 |
Publications ? help Back to Top | |||
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