PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400012445
Common NameLOC102593659
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ERF
Protein Properties Length: 234aa    MW: 26782.6 Da    PI: 4.9637
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400012445genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.63.1e-1856105255
                   AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                            y+GVr ++ +g+Wv+eIr+p++   + r++lg++ ta++Aa+a++ a+++++g
  PGSC0003DMP400012445  56 TYRGVRKRS-WGKWVSEIREPKK---KSRIWLGTYPTAQMAARAHDVAALAIKG 105
                           69****888.**********854...6***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.1E-3156114IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-2156114IPR016177DNA-binding domain
PROSITE profilePS5103223.01156113IPR001471AP2/ERF domain
SMARTSM003807.1E-3656119IPR001471AP2/ERF domain
PfamPF008472.0E-1256105IPR001471AP2/ERF domain
PRINTSPR003672.8E-105768IPR001471AP2/ERF domain
CDDcd000181.83E-3357115No hitNo description
PRINTSPR003672.8E-107995IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MENQEEIINL ENRHDFICNG LNSPSNTATS SSSFSRKIEE EKKKKKRNDD DNKHPTYRGV  60
RKRSWGKWVS EIREPKKKSR IWLGTYPTAQ MAARAHDVAA LAIKGCSAHL NFPHLVDQYP  120
RPASTCHKDI QAAAAKAAAI PFPEEDEEEE DRVESDQVEL RNCHSSTNLF LENTKESLNS  180
PSREDDDTFF DLPDLSIDMV DQTNSYWCTM STWQQLIGAD TTVYRLDEPF LWE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-17541141273Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400012445
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755170.0HG975517.1 Solanum lycopersicum chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015163379.11e-176PREDICTED: ethylene-responsive transcription factor ERF038-like
SwissprotQ8LBQ75e-50ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBLM1AA091e-174M1AA09_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000180791e-175(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21224225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44940.15e-44ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]