PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400012270
Common NameLOC102603983
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB
Protein Properties Length: 331aa    MW: 36728.9 Da    PI: 5.258
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400012270genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.82.6e-181461148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                          +g+WT+eEd +lv +v+q+G+g+W++ + + g++R+ k+c++rw +yl
  PGSC0003DMP400012270 14 KGPWTPEEDIILVSYVQQHGPGNWRALPTKTGLHRCSKSCRLRWTNYL 61
                          79********************************************97 PP
2Myb_DNA-binding50.54.8e-1667112148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                           rg++T +E++ ++++ ++lG++ W++Ia++++  Rt++++k++w++yl
  PGSC0003DMP400012270  67 RGNFTDQEEKMIIQLQALLGNK-WAAIASYLP-ERTDNDIKNYWNTYL 112
                           89********************.*********.*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.362965IPR017930Myb domain
SuperFamilySSF466893.82E-3111108IPR009057Homeodomain-like
SMARTSM007177.5E-151363IPR001005SANT/Myb domain
PfamPF002495.0E-161461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-241568IPR009057Homeodomain-like
CDDcd001671.29E-101661No hitNo description
SMARTSM007174.2E-1666114IPR001005SANT/Myb domain
PROSITE profilePS5129420.19866116IPR017930Myb domain
PfamPF002492.9E-1567112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.0E-2569117IPR009057Homeodomain-like
CDDcd001671.04E-1069112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MGRVPCCDKV GVKKGPWTPE EDIILVSYVQ QHGPGNWRAL PTKTGLHRCS KSCRLRWTNY  60
LRPGIKRGNF TDQEEKMIIQ LQALLGNKWA AIASYLPERT DNDIKNYWNT YLKKKMKKLD  120
QLDQCHGSND LFSLENGLTH LSSSNSSTSR GQWERTLQAD INMAKKALHN ALSLENPQVS  180
STTTTTYASS TENIARLLQG WMGSSTSSTN NSESSKTSSN NIATTDSSSC DGNPNAESKG  240
GMGLMEAFES LFGLESFESS SSDELSQTAT PEAETEAIKI EIKKEENEHD VEVPLSVILE  300
NWLLDENTLN IQPKNDLTTL ISFDQTPHLF *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C4e-261411627128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400012270
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankX991340.0X99134.1 L.esculentum mRNA for myb-related transcription factor, THM6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015168798.10.0PREDICTED: myb-related protein 306-like
SwissprotP813924e-98MYB06_ANTMA; Myb-related protein 306
TrEMBLM1A9K40.0M1A9K4_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000178440.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47600.11e-84myb domain protein 94
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]
  2. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]