PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400012203 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 226aa MW: 26095 Da PI: 6.8838 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 54.9 | 1.5e-17 | 34 | 87 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ eq+++Le+ Fe +++ e++ +LA+ lgL+ rq+ +WFqNrRa+ k PGSC0003DMP400012203 34 KKRRLNLEQVKALERSFEIGNKLEPERKMQLARALGLKPRQIAIWFQNRRARCK 87 4557899*********************************************99 PP | |||||||
2 | HD-ZIP_I/II | 129.2 | 1.7e-41 | 33 | 123 | 1 | 91 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 ekkrrl+ eqvk+LE+sFe +kLeperK++lar+Lgl+prq+a+WFqnrRAR ktkqlEkdye Lkr++d+lk++n++L++++++L++ PGSC0003DMP400012203 33 EKKRRLNLEQVKALERSFEIGNKLEPERKMQLARALGLKPRQIAIWFQNRRARCKTKQLEKDYEILKRQCDKLKSDNDALKTQNKNLHS 121 69**************************************************************************************9 PP HD-ZIP_I/II 90 el 91 e+ PGSC0003DMP400012203 122 EI 123 87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 9.41E-19 | 29 | 91 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 6.4E-18 | 32 | 93 | IPR001356 | Homeobox domain |
PROSITE profile | PS50071 | 16.066 | 33 | 89 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 9.3E-15 | 34 | 87 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.95E-14 | 34 | 90 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 9.8E-19 | 36 | 96 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 8.7E-6 | 60 | 69 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 64 | 87 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 8.7E-6 | 69 | 85 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 2.8E-16 | 89 | 129 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 226 aa Download sequence Send to blast |
MLMRRAMSFD HQDSRVDDID MSDDDGSSQL LGEKKRRLNL EQVKALERSF EIGNKLEPER 60 KMQLARALGL KPRQIAIWFQ NRRARCKTKQ LEKDYEILKR QCDKLKSDND ALKTQNKNLH 120 SEILSLRNRE SGGGGTPILF NLNKENEGSN WNNGSGDENS TIIDVNLGRT SSTNSPHNNN 180 NHDHVFQTAN FKIEEQTHEE GFCNMFTNVE DQTNYWPLPV QQHFY* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 81 | 89 | RRARCKTKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400012203 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin. {ECO:0000269|PubMed:12644682}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975441 | 0.0 | HG975441.1 Solanum pennellii chromosome ch02, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015168773.1 | 1e-155 | PREDICTED: homeobox-leucine zipper protein HAT7-like | ||||
Swissprot | Q8LAT0 | 7e-56 | ATB20_ARATH; Homeobox-leucine zipper protein ATHB-20 | ||||
TrEMBL | M1A9E4 | 1e-167 | M1A9E4_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400017751 | 1e-168 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA848 | 24 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69780.1 | 7e-49 | HD-ZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400012203 |
Publications ? help Back to Top | |||
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