PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400012169
Common NameLOC102583278
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB
Protein Properties Length: 356aa    MW: 39534.9 Da    PI: 5.9986
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400012169genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.44.5e-152572148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                          +g W++eEde+l  +    G g+W+ Iar  g+ R++k+c++rw +yl
  PGSC0003DMP400012169 25 KGLWSPEEDEKLMSYMLTNGQGCWSDIARNAGLQRCGKSCRLRWINYL 72
                          678*******************************************97 PP
2Myb_DNA-binding49.97.3e-1678121146
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                           rg+++ +E+el+v+++  lG++ W+ Ia++++ gRt++++k++w++
  PGSC0003DMP400012169  78 RGAFSLQEEELIVHLHSILGNR-WSQIAARLP-GRTDNEIKNFWNS 121
                           89********************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.2062072IPR017930Myb domain
SuperFamilySSF466897.65E-2823119IPR009057Homeodomain-like
SMARTSM007177.0E-112474IPR001005SANT/Myb domain
PfamPF002491.2E-132572IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.7E-232679IPR009057Homeodomain-like
CDDcd001673.03E-92872No hitNo description
PROSITE profilePS5129424.53173127IPR017930Myb domain
SMARTSM007175.9E-1577125IPR001005SANT/Myb domain
PfamPF002494.7E-1478121IPR001005SANT/Myb domain
CDDcd001672.06E-1080120No hitNo description
Gene3DG3DSA:1.10.10.601.7E-2480128IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MRKPEHNNTT MKEKEKVNKL GKLRKGLWSP EEDEKLMSYM LTNGQGCWSD IARNAGLQRC  60
GKSCRLRWIN YLRPDLKRGA FSLQEEELIV HLHSILGNRW SQIAARLPGR TDNEIKNFWN  120
STIKKRLKNN NNNSNNSTPS PNTSDSSMGG IFPMQGHDVN VMAALCMDNS SSTTSGSSMQ  180
AMVPRNHFNP FPQLDNTSYD ISGLVEPVNL GQFGCSGGDG GFLDYGVVET YSMMGLGSDE  240
FSIPSLEGVN NKSTTTMGEN NNSNVDFNSN NIVSGANDYD SIIEKKITNG NNNNNNQHLM  300
NMSGSSDQSL KVEDYMVGFG NHHHWHGESL RIGEFDWEGL LANVSSLPYL DFQVE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-27231275108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400012169
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754400.0HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006345502.20.0PREDICTED: transcription factor MYB46
TrEMBLM1A9C00.0M1A9C0_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000177090.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12870.14e-69myb domain protein 46
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]