PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400011610
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 349aa    MW: 36847.6 Da    PI: 8.4981
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400011610genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.57.6e-11281326655
                           HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           +++Er RR ri  ++ +L++l+P+     +k  s a++L +Av++I+ Lq
  PGSC0003DMP400011610 281 SIAERERRTRISGKLKKLQDLVPNM----DKQTSYADMLDLAVQHIRTLQ 326
                           689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.954275325IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.72E-15278341IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.94E-11279330No hitNo description
Gene3DG3DSA:4.10.280.105.8E-14280340IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.2E-12281331IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.5E-8281326IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010119Biological Processregulation of stomatal movement
GO:0005829Cellular Componentcytosol
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MSHTSTTAGG GGGLTRYGSA PGSFLTTAVE SVVNGNHEFA SHGSHHSNLG PSRFFPSNLA  60
STSLNSESTS KAKEQSNLQR SIGFNDLTIG GGGGGGGGGG GLPTASTTPL VRHSSSPARF  120
LNQLATAAGD TGFSVSMGRG SYNSKGGGDS SRGITRLNSQ LSFTRQEALS QIAEENEDIE  180
GTSIANGHRK STHSYASASS FAMGSWEDNN SIMFSVTPGK RAKQISNDIV NGLDDGETQF  240
QFGLSQTALE MASMDRLLHI PEDSVPCKIR AKRGCATHPR SIAERERRTR ISGKLKKLQD  300
LVPNMDKQTS YADMLDLAVQ HIRTLQDQVQ NLNTELENCK CGCKKSSQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400011610
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKU5301531e-171KU530153.1 Solanum demissum R8 gene cluster, partial sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006366720.10.0PREDICTED: transcription factor bHLH128-like isoform X3
SwissprotQ8H1024e-79BH128_ARATH; Transcription factor bHLH128
TrEMBLM1A8580.0M1A858_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000167930.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA64552328
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05805.15e-80bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]