PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400011443
Common NameLOC102602460
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family HSF
Protein Properties Length: 363aa    MW: 42263.3 Da    PI: 5.4635
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400011443genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind113.21.7e-35381302103
                           HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXX CS
          HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgk 90 
                           Fl+k+ye ++d+++++++sws  +nsf+v+d+++fa ++Lp+yFkhsnf+SFvRQLn+YgF+kv+ ++         weF+h+ F +g+
  PGSC0003DMP400011443  38 FLTKTYEFVDDQNTNNVVSWSIGNNSFIVWDPQTFAMNLLPRYFKHSNFSSFVRQLNTYGFRKVNPDQ---------WEFAHEGFLRGQ 117
                           9********************999*****************************************999.........************ PP

                           XXXXXXXXXXXXX CS
          HSF_DNA-bind  91 kellekikrkkse 103
                           ++ll++i+r+k++
  PGSC0003DMP400011443 118 RHLLKTIRRRKTS 130
                           **********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.7E-3731122IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467855.3E-3333127IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004154.5E-5734127IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.7E-3038127IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.7E-183861IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.7E-187688IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434077101IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.7E-1889101IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MDPNFGVPIK EEFPRSNEPS MWIPQPMEGL HENGPPPFLT KTYEFVDDQN TNNVVSWSIG  60
NNSFIVWDPQ TFAMNLLPRY FKHSNFSSFV RQLNTYGFRK VNPDQWEFAH EGFLRGQRHL  120
LKTIRRRKTS NFHPGQGSNQ GIDSYIELGK LEIDGEIDRL RREKKDLMME LVELKQHQQT  180
TKSNIKSMEE KLKRTEAKQQ QMMNFLAKAM QNPRFLEQMM QQKERRKELE EEIKNKRRRQ  240
IDHHQGPSNI VGDLDHSVNN SDGNFNIKME PHEYYYGEMN GFDDLELEAS LAMSMQGGPS  300
GNTINFEKGY NIENKSIDHE GFWEGLLNEN IEDVINLLEG ENEEDHVDIL AHQLGFLGST  360
PK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A7e-253613018123Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224238RRKELEEEIKNKRRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400011443
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755210.0HG975521.1 Solanum lycopersicum chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006363482.10.0PREDICTED: heat stress transcription factor A-6b-like
SwissprotQ9LUH81e-120HFA6B_ARATH; Heat stress transcription factor A-6b
TrEMBLM1A7S20.0M1A7S2_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000165110.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA57224113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.11e-112heat shock transcription factor A6B
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]