PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400011342
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 289aa    MW: 32718.1 Da    PI: 4.6627
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400011342genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.21.1e-11172215654
                           HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                   HLH   6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                            ++ErrRR+r+N++++ Lr+++Pk +      K++  +iL  +++Y+k+L
  PGSC0003DMP400011342 172 LMAERRRRKRLNDRLSMLRSVVPKiS------KMDRTSILGDTIDYMKEL 215
                           589*********************66......****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.453166215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.07E-16169234IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.2E-9172215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.1E-12172221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.8E-15173227IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.50E-5173219No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MEYYNENGFL EELLSLRSES WDTTNVVPME MCHDFYNNVL NYDNIPLPCS TTSNSFEGYS  60
CNLPFDQQSL INCGTSFYSP LCDELSPPSS FPSQEDFSSI LDDEMGNYSF QNLEMGNNNC  120
NNVVIPCKLE ENQVCEGAGG SGGGASNFNI GFCPEIRKSK SKKIDGQPSK NLMAERRRRK  180
RLNDRLSMLR SVVPKISKMD RTSILGDTID YMKELLEKIN NLQEEMELGP NQLSLMSIFK  240
DVKPNEMLVR NSPKVSYNNN IYLLPKKVQQ SKMDYISINI VLFKSVSI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1174181ERRRRKRL
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400011342
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754430.0HG975443.1 Solanum pennellii chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006364975.10.0PREDICTED: transcription factor bHLH93-like
TrEMBLM1A7J60.0M1A7J6_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000163600.0(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65640.26e-39beta HLH protein 93
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]